EY728156

Overview
NameEY728156
Unique NameEY728156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1074
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KDM3B_MOUSE (Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 9.017e-17
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  101 EINIFQFFKGY---LEGRRYRNGWPGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTH 442
            ++ +  F+ G+    +  R  +G P +LKLKDWPP   F + +P    + +  LP  +YT  + G LNLA++LP+  ++PDLGPK Y AYG      R    T LH D+SDAVNV+ +
Sbjct: 1257 DVKVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVY 1373          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KDM3B_HUMAN (Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.017e-17
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  101 EINIFQFFKGY---LEGRRYRNGWPGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTH 442
            ++ +  F+ G+    +  R  +G P +LKLKDWPP   F + +P    + +  LP  +YT  + G LNLA++LP+  ++PDLGPK Y AYG      R    T LH D+SDAVNV+ +
Sbjct: 1456 DVKVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVY 1572          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KDM3A_CHICK (Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.633e-16
Identity = 47/116 (40.52%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  146 RYRNGWPGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVKIPPWQQKNHLK 490
            R   G P +LKLKDWPP   F + +P    + +  +P  +YT  + G LNLA++LP   ++PDLGPK Y AYG      R    T LH D+SDA NV+ +    K    Q++  LK
Sbjct: 1038 RTEEGEPMVLKLKDWPPGEDFRDMMPSRFDDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQADQEEEVLK 1152          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KDM3A_RAT (Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.969e-16
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  164 PGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVKIPPWQQKNHLKIYR 499
            P +LKLKDWPP   F + +P    + +A +P  +YT  + G LNLA++LP   ++PDLGPK Y AYG      R    T LH D+SDA NV+ +   V IP  Q +   ++ R
Sbjct:  926 PMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY---VGIPKGQCEQEEEVLR 1034          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KDM3A_MOUSE (Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.969e-16
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  164 PGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVKIPPWQQKNHLKIYR 499
            P +LKLKDWPP   F + +P    + +A +P  +YT  + G LNLA++LP   ++PDLGPK Y AYG      R    T LH D+SDA NV+ +   V IP  Q +   ++ R
Sbjct: 1042 PMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY---VGIPKGQCEQEEEVLR 1150          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KDM3A_HUMAN (Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 1.302e-15
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  164 PGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVKIPPWQQKNHLK 490
            P +LKLKDWPP   F + +P    + +A +P  +YT  + G LNLA++LP   ++PDLGPK Y AYG      R    T LH D+SDA NV+ +    K    Q++  LK
Sbjct: 1040 PMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQCEQEEEVLK 1148          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KD3AA_XENLA (Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.188e-14
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  119 FFKGYLE-GRRYRN--GWPGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVKIPPWQQKNHLKIYR 499
            F++G+ +   R +N  G   +LKLKDWPP   F + +     + +  +P  +YT  + G LNLA +LPA  ++PDLGPK Y AYG      R    T LH D+SDA NV+ +   V IP  +     ++ R
Sbjct: 1032 FWEGFEDISARLKNDKGEAMVLKLKDWPPGEDFRDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPAYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDATNVMVY---VGIPKGEHDQEQEVIR 1158          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: JHD2C_HUMAN (Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 5.470e-14
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   59 HKVKAIDCLEWCEVEINIFQFFKGYLE-GRRYRN--GWPGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVK 457
            H+   ++C +      N+ +F+ G+ E  +R +N  G   +LKLKDWP    F+  +P    + +  LP  +Y +P+ G  NLA+ LP   ++PDLGP+   AYG           T LH ++SD VN+L +    K
Sbjct: 2218 HQADLLNCKDSIISNANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAK 2353          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: KD3AB_XENLA (Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.079e-13
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 2
Query:  170 MLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVKIPPWQQKNHLKIYR 499
            +LKLKDWPP   F + +     + +  +P  +YT  + G LNLA +LP   ++PDLGPK Y AYG      R    T LH D+SDA NV+ +   V IP  +     ++ R
Sbjct: 1055 VLKLKDWPPGEDFRDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPTYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY---VGIPKGEHDQDQEVLR 1161          
BLAST of EY728156 vs. ExPASy Swiss-Prot
Match: JHD2C_MOUSE (Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.715e-13
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   59 HKVKAIDCLEWCEVEINIFQFFKGYLE-GRRYRN--GWPGMLKLKDWPPSNSFEECLPRHGAEFIAMLPFADYTHPKSGPLNLATKLPAV-LKPDLGPKAYIAYGSSEELGRGDSVTKLHCDISDAVNVLTHTAEVK 457
            H+   ++C +      N+ +F+ G+ E  +R +N  G   +LKLKD P    F+  +P    +F+  LP  +Y +P+ G  NLA+ LP   ++PDLGP+   AYG +         T LH + SD VNVL +    K
Sbjct: 2028 HQADLLNCKDSIVSNANVKEFWDGFEEVSKRQKNKGGETVVLKLKDCPSGEDFKAMMPTRYEDFLRCLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHIEASDVVNVLVYVGIAK 2163          
The following BLAST results are available for this feature:
BLAST of EY728156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
KDM3B_MOUSE9.017e-1739.83Lysine-specific demethylase 3B OS=Mus musculus GN=... [more]
KDM3B_HUMAN9.017e-1739.83Lysine-specific demethylase 3B OS=Homo sapiens GN=... [more]
KDM3A_CHICK7.633e-1640.52Lysine-specific demethylase 3A OS=Gallus gallus GN... [more]
KDM3A_RAT9.969e-1641.59Lysine-specific demethylase 3A OS=Rattus norvegicu... [more]
KDM3A_MOUSE9.969e-1641.59Lysine-specific demethylase 3A OS=Mus musculus GN=... [more]
KDM3A_HUMAN1.302e-1541.82Lysine-specific demethylase 3A OS=Homo sapiens GN=... [more]
KD3AA_XENLA4.188e-1437.40Lysine-specific demethylase 3A-A OS=Xenopus laevis... [more]
JHD2C_HUMAN5.470e-1432.85Probable JmjC domain-containing histone demethylat... [more]
KD3AB_XENLA2.079e-1338.74Lysine-specific demethylase 3A-B OS=Xenopus laevis... [more]
JHD2C_MOUSE2.715e-1333.58Probable JmjC domain-containing histone demethylat... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-C02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728156 ID=EY728156; Name=EY728156; organism=Citrus sinensis; type=EST; length=1074bp
AATAAAATAAAAAAGGGACCGCAGTCGGGTCGGGATTCCCGGGTCGACCC
CGCGTCCGCACAAGGTTAAAGCCATTGATTGTTTGGAGTGGTGTGAGGTT
GAAATTAATATTTTCCAGTTCTTTAAGGGGTACTTAGAAGGTCGAAGGTA
CAGGAATGGATGGCCAGGAATGCTGAAGTTGAAGGATTGGCCTCCATCAA
ATTCATTTGAGGAGTGTTTGCCAAGGCATGGTGCTGAATTCATAGCTATG
CTTCCCTTTGCTGATTATACCCATCCAAAATCTGGTCCATTGAATCTTGC
CACAAAGCTTCCTGCTGTTTTAAAGCCTGACTTGGGACCCAAAGCATACA
TTGCTTATGGGTCTTCGGAAGAACTTGGAAGAGGTGATTCAGTGACGAAA
CTACATTGTGACATTTCTGATGCGGTCAATGTTCTGACTCACACAGCTGA
AGTGAAAATTCCCCCATGGCAACAAAAAAATCATTTAAAAATTTACAGAA
AAAATATGATGCTGAAAATTTGGACAAGCTTTCAAGTCGTGGGCCAAATG
CATCAGGGAAAATGGGGAAGGGAGCCCACAAAAAAAAACTTCCAAAAAAA
AAAAAACCCCTAAAGGAACCCCCACTGGGGATTGGCTCCTTAATGGGACC
ATTTTTTATTTTGAGGAAAAAAAAACAAGATGGCTTAAAAAAACCCCCTC
CCCCAAAAAGGGAAAAAATTTCAAAGGGGGTGGGAATGCCCCGGGGGTTT
AACTCCCAAAAAAGGGAAAAAAATCGGCGCTTGGGGGGGCACTCGAATTT
TTTAGGGGCCCAAAACCCAAACCGGGGGGGGAAGGGGGAGGCGCTTTCTC
AAATTCCTTTCCCCAAAAACACAGGGTTTTAAAAGACAAAAAAATTTGTT
GGGGGGGAAAAAGAGCAGGGGGAAAAACCCCCCCCCCTTTTCCCAAAGGG
GGGGGAGGGGGAAAAAGAGGGGGGGAACAACGGTGGGGGGGCGGCGGTGA
TTGTAAAAAAAAAAATTTTTTTACCCCCCCCGCCCCCCCCCGGCCCCTCC
TTTTTGGGGGGGGAGGAAAATAAC
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