EY728155

Overview
NameEY728155
Unique NameEY728155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 5.300e-37
Identity = 72/86 (83.72%), Postives = 76/86 (88.37%), Query Frame = 2
Query:   68 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 325
            MVLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 7.653e-36
Identity = 72/86 (83.72%), Postives = 74/86 (86.05%), Query Frame = 2
Query:   68 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 325
            MVLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.485e-34
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 2
Query:   68 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            MVLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 7.163e-34
Identity = 68/84 (80.95%), Postives = 72/84 (85.71%), Query Frame = 2
Query:   68 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            MVLQNDIDLL+PP           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.756e-32
Identity = 66/86 (76.74%), Postives = 69/86 (80.23%), Query Frame = 2
Query:   68 MVLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 325
            MVL +DIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:    1 MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.889e-26
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 2
Query:   86 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            +DLLNP            +LVQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of EY728155 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 6.078e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   89 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 319
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of EY728155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH5.300e-3783.7240S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU7.653e-3683.7240S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH5.485e-3479.7640S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH7.163e-3480.9540S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE8.756e-3276.7440S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO1.889e-2670.5140S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_XENLA6.078e-2568.8340S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT6.078e-2568.8340S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE6.078e-2568.8340S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN6.078e-2568.8340S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-B12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728155 ID=EY728155; Name=EY728155; organism=Citrus sinensis; type=EST; length=984bp
CCCGCGTCCGGCTAGGAATTTCTAGGGTTTCCTCCTGAATCTCGTCTGGC
AATAGCAATTAGCAAGCATGGTTCTCCAAAACGATATTGATTTGTTGAAT
CCTCCTGCTGAGCTTGAGAAGAAGAAGCACAAGCTTAAGCGGCTTGTTCA
ATCCCCCAATTCCTTTTTCATGGATGTGAAATGTCAGGGTTGTTTCAACA
TAACAACTGTTTTCAGCCACTCTCAAACTGTTGTGGTTTGTGGCAACTGC
CAATCCGTTCTGTGCCAGCCCACTGGTGGTCGTGCCAGACTCACTGAGGG
ATGCTCGTTCAGAAGAAAGGGTGACTAAGTGTTGCCTAAATGATAGATCT
TTTCATTTTGGTTATGATGTATTAATTTTGGTAGAAGTTTTAAGGTTAGA
CAGTGTTTTAACCTTTTGTTTCAAATTTAATTTACTCGATGTAGTGGATG
ATCTTATGTTTGGAAGAAAATATTTTTTAAGTGAATGTTTTTTAANNNAA
AAAAANAAATNATAAAAAAAAAAAAAAAAAATATAAAATAAAAATAAAAA
ATTAAATAAAAAAAAAATAAATATAATAATATATAAAAATAATAAATTAT
TTATAAATTTTTAATATATATATAAAATTTTAATTNTAAAAAAAAAAAAA
TGGGGGGGGCGCGCCCCAAGGAATAACCCTCTAAAAAACACGAGGGTGGG
ACACAATGACACTCTTTATAAAGGGGGGCGCGAGAAATTATATATACTGG
GGGGGGGGTTTTTTTTATCGCAACGGTGGGGAGAAGGAACACGCGGTGGA
TGATACAAACTTAAAAACCACACATCTAAAACAACCCCCCCCTTATTCCC
CTGAGGAGGGGGGAAAAAAACAAAGCAAAAGCCCACACGCCCCCACTCCT
CCTCTCACACCCCAAGAATATCAGACCAAACACCTTGGGAGAGGAGAGAA
AAAGATAACCCCCCCCTCAAACGTAAGTGCTCAG
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