EY728154

Overview
NameEY728154
Unique NameEY728154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length961
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728154 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.729e-12
Identity = 53/179 (29.61%), Postives = 89/179 (49.72%), Query Frame = 2 
Query:   65 MAEAIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKRQMKETAVRVWLDDLKHASYDMEDVLDEW-NTAIRKLQMKRSSGDANVSQPMRTVRPSFIIPSYWFSPGQLVQRHNIATKIKNVDKKLDNIVKDINAYGFIISRELGSGKVASRPSTTSF-LEEP 595
            MAEA +  +LE L   + ++      LI G E+E E L   F  I+AV++DA+++Q+K+ A+  WL  L  A+Y+++D+L E  N AIR  Q +                        ++ PG +  RH I  ++K + +KLD I ++   + F+   ++   + A+    T F L EP
Sbjct:    1 MAEAFLQVLLENLTSFIGDKLV----LIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDKAIENWLQKLNSAAYEVDDILGECKNEAIRFEQSRLG----------------------FYHPGIINFRHKIGRRMKEIMEKLDAISEERRKFHFL--EKITERQAAAATRETGFVLTEP 151
The following BLAST results are available for this feature:
BLAST of EY728154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RGA4_SOLBU9.729e-1229.61Putative disease resistance protein RGA4 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-B11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728154 ID=EY728154; Name=EY728154; organism=Citrus sinensis; type=EST; length=961bp
CAACCAAAACAAAGACTTGACCCTACCTACTTGCTTAGATCAAATTCAAT
AACCATCTTTGACCATGGCTGAAGCTATTGTCTCCACAATCTTGGAGCAA
CTGGCTTTAATCCTTGTTGAACAAACAGCTGCAGGGGTCAGACTAATTGC
TGGCGCCGAGGAGGAAGTCGAAAATCTCCACCGCCGTTTCCATTTGATTA
AAGCTGTTGTTGAAGATGCAGAAAAAAGACAAATGAAGGAGACTGCAGTG
AGAGTTTGGTTGGATGATCTTAAGCACGCATCCTACGACATGGAAGATGT
GTTGGATGAGTGGAACACTGCTATCCGGAAGCTGCAAATGAAGAGATCAT
CTGGAGATGCAAATGTTTCTCAGCCTATGAGAACGGTACGTCCTTCCTTC
ATCATCCCTTCTTACTGGTTTTCTCCTGGGCAACTAGTCCAGCGGCATAA
CATTGCTACCAAGATAAAGAATGTAGATAAGAAGCTAGACAATATTGTTA
AGGATATAAATGCCTACGGGTTTATTATCTCGAGGGAGCTGGGATCCGGG
AAGGTAGCATCTCGACCAAGCACTACCTCTTTTCTTGAGGAACCTTAAGA
AAACGTGGAAAAAAACCCCTTCCGAAAAAGGGAACAAGGCTTGGTAATGA
GTGGGAGGGAAAACCATAACTGGCTAGTGCTGGCTATTTTTAGTCAAGGG
GCCTCCCCCGCCCCCTAAAAAAATTTTCAATTTAAGGGTAGGGGGGGGAA
ACGGAAAAAAACCCCCCCTTTGGCAAAACAAAATTTTTTAAAAGGAAAAA
TGAAGGGGAGGGAAAAACTTTTTTAAAAGAAAAAAAAAAAATGGGGGTTT
TGTGGGGGTCTCTGAAAACCCTTTTTTGTGAAAAAAATATTTTAAAAAAA
TTGGATAAAAAGGGGGGAAATTTTTTTTTTTGTGGGAGTTTTTTTTTTTT
TAAATAAAAGG
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