EY728152

Overview
NameEY728152
Unique NameEY728152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length981
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728152 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.901e-27
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 2 
Query:  191 VVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGREMGD-SPKDG 421
            +V+T+DPKPRLRWT +LH+RFVDAV QLGGP KATPK IMR M VKGLTL+HLKSHLQK+RLGKQ  +E GD S K+G
Sbjct:   27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEG 104
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BLAST of EY728152 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.816e-14
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  173 GGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 373
            GG+ P V     P PRLRWT +LH  FV AV  LGG  KATPK +++ M+VKGLT+ H+KSHLQ YR
Sbjct:   13 GGVRPYV---RSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
The following BLAST results are available for this feature:
BLAST of EY728152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH2.901e-2774.36Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH2.816e-1458.21Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-108-B09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728152 ID=EY728152; Name=EY728152; organism=Citrus sinensis; type=EST; length=981bp
TGTGGCCGCGGTACGGGTCGGGATTTCCGGGTCGACCCCGCGTCCGGGAC
GATTGAACGAGCCCTAATTGAAGAAGCATCTGCATTTCATTTTAAACACA
GGCGAAGTGAGAATGATTCAAAGAGAAGAAATAATAAGCCGGACCAGTTA
TCATTATCATCAGAATCACGGAGGCGGAATAGAGCCGTGCGTGGTCATGA
CATCTGATCCAAAGCCTCGCCTCCGTTGGACCGCCGACCTTCACGATCGA
TTCGTTGACGCCGTCACTCAACTAGGCGGTCCTTCCAAGGCTACACCAAA
GGCTATCATGCGGACTATGAATGTGAAGGGACTTACTCTCTTTCACTTGA
AGAGTCATCTCCAGAAATACAGGCTAGGTAAGCAATCGGGGAGAGAAATG
GGTGACTCGCCCAAAGATGGTTGGTTTTCCTTATTTGCTCCGTACAACTT
TACACCATAGCTTCCCAGAATTTTGCTATGAAATTCAGACGTTGATCTAG
ACTTGTTTCCTTTACTTCATATCTCATAAAAAGCTCTGCGAATGATAATT
CTCTTCCAAACTTTCCGCTTCGGATATGAATGAAAGTTATGAAATCCAGG
GGGGTTTTAAATTGCAATGGGAAGTGGAAAGTAATTTGGCTTTGGAAGTT
GAGGCTGAAAACCCTTGGCAAATTCCCCCGAAGGGCACAAAAAAAATTTT
TGCTTTGGTTGGAAAGGGCCTGGGAAAAATATTTCTGATTAAATTTCTGG
GAGGGGCCATTTTTTGGCCCCAACAGTGAAAAAGGTGAGGGGATATGGGG
ATAAAATGGGCCAAAAATTTCCTTTTTTGTACCCCCCTTTGGGTTTTTTA
ACCCCACAAATCTGGGGGGGAGGGACCAAAAAGGGGGGGGGGCCCAAAAA
AAATTGGGGGCCCCCCTCCTCCCCCCCCCCTAGAAGGGGGGGGTAGTGTT
GTGTTTATGTTGAGAAGGTTGGTTTTTTTAC
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