GE213252

Overview
NameGE213252
Unique NameGE213252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GE213252_ssr61 microsatellite GE213252_ssr61:61..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6255 contig Csv1_Contig6255:64..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.404e-19
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = -3
Query:  253 KLQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 576
            +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPV VKQ+L E  A V KR++YI AE+K  ++  +DLE++   ++E + ++QQ  Q  QA KA A
Sbjct:   18 QLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = -3
Query:  253 KLQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 576
            +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPV VKQ+L E  A V KR++YI AE+K  ++  +DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:   18 QLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_CANFA (Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = -3
Query:  253 KLQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 576
            +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPV VKQ+L E  A V KR++YI AE+K  ++  +DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:   18 QLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.154e-18
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = -3
Query:  259 KLQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSLQAGKA 576
            +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPV VKQ+L E  A V KR++YI AE+K  ++  +DLE +   ++E + ++QQ  Q  QA KA
Sbjct:   18 QLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 44/98 (44.90%), Postives = 55/98 (56.12%), Query Frame = -3
Query:  280 LQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQ 573
            LQK   K  + R     QL EN+ VL EL LL     VYKL GPV VKQ+L E   NV KRIEYI  ELK      +++E+     +E++ K QQ+ Q
Sbjct:   22 LQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQQQCQ 119          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_CAEEL (Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 39/114 (34.21%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  253 KANDLSKLQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 594
            + N L  L+KD  K    R++  ++L E++ V  EL L+   + VYKLIG V V+QDL E  + V KR+E+I +E K ++A+  D+ +K   +++ +  +Q+  Q +    A+A
Sbjct:   10 EVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQKSFQMMAQAAAQA 123          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_CAEBR (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 36/103 (34.95%), Postives = 65/103 (63.11%), Query Frame = -3
Query:  274 LSKLQKDIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSL 582
            L  L+KD  K    R++  ++L E++ V  EL L++  + VYKL+GPV V+QDL E  + V KR+E+I +E+K ++A+  D+ +K   +++ +  +Q+  Q +
Sbjct:   14 LKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQKAFQMM 116          
BLAST of GE213252 vs. ExPASy Swiss-Prot
Match: PFD6_DICDI (Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = -3
Query:  268 KANDLSKLQK-DIGKNHQVRKKYPIQLGENELVLKELGLLNEGANVYKLIGPVFVKQDLAEGNANVRKRIEYIFAELKGLDATFQDLEEKQNSKKEAIFKVQQRIQSLQA 594
            KA D  ++ + ++ K    R K   QL ENE+V KE  LL   A +YKL GPV  KQ   E    +  R++ I   LK ++  F+D+E+K   ++  IF+ Q +I+SL A
Sbjct:   24 KARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAKIYKLNGPVLFKQTKEEAENTITSRLDIINNNLKTIETNFKDIEKKAMEQRNKIFEYQNKIRSLTA 133          
The following BLAST results are available for this feature:
BLAST of GE213252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFD6_BOVIN7.404e-1944.44Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV... [more]
PFD6_HUMAN1.263e-1844.44Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 ... [more]
PFD6_CANFA1.263e-1844.44Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 P... [more]
PFD6_MOUSE2.154e-1844.34Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 ... [more]
PFD6_DROME2.725e-1344.90Probable prefoldin subunit 6 OS=Drosophila melanog... [more]
PFD6_CAEEL3.559e-1334.21Probable prefoldin subunit 6 OS=Caenorhabditis ele... [more]
PFD6_CAEBR7.929e-1334.95Probable prefoldin subunit 6 OS=Caenorhabditis bri... [more]
PFD6_DICDI3.013e-1237.27Probable prefoldin subunit 6 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank description102 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213252 ID=GE213252; Name=GE213252; organism=Citrus sinensis; type=EST; length=653bp
AAAAGCAACATATGCATTTCATTGATTTACTTGGATAAAACACAATAGTC
CTCTTACAAAACACACACACAGACAAAATTGACACTGATTTTCATTCATA
ACAACCCACAATAACTGAAATAACGCTGATAATCTTGCTATAACGCACAA
CTATATAGCCTCAAAAATTAACAGTAAAAAACACCAAGTCCCCCTTGAGG
CAAAACAAAAACAAAGCTGGGGGCAAAGCGAACACTCCTACAAAGTTAAT
TAGGCCTTAGCTTTTCCTGCCTGAAGTGATTGTATCCTCTGTTGTACTTT
GAAAATCGCCTCCTTTTTGCTATTTTGTTTTTCTTCCAAATCCTGAAAAG
TTGCATCAAGTCCCTTCAACTCAGCAAAAATGTATTCAATTCTCTTGCGC
ACATTGGCATTACCCTCTGCCAAATCTTGCTTCACAAAAACTGGACCAAT
CAATTTATACACATTTGCTCCTTCATTTAACAAACCCAACTCCTTAAGGA
CGAGCTCGTTTTCTCCAAGCTGAATAGGGTACTTCTTTCTCACTTGATGA
TTTTTACCAATATCTTTTTGGAGTTTGCTGAGATCGTTAGCTTTGGTTTC
GAGTTCACGTTGAAGCTCTCGAAGAGCTGCGACCTCGGCCGCGACCACGC
TAA
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