EY728104

Overview
NameEY728104
Unique NameEY728104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length987
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728104 vs. ExPASy Swiss-Prot
Match: C3H62_ORYSJ (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 9.941e-34
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 3 
Query:   66 GQQEKLKVEQCKVYLRKNGLRLTGNKPTHIQHIKEHLEISNGGGERRYPIFSFVLDCKGDACTGDVVMFKQNVYKMFNIAACSASGPPCGKRIVAGRIVKESYGAAKQQHTFTI 407
            GQ EKLKV +CK YLR + LRL+GNK   +  I+  +E+   G E +YP+ SFVL+C+GD+C GDVV+F+QN+YK    A     G  CG+R  AGRI+KESYG  KQQHTFTI
Sbjct:  130 GQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRIRGQIEVKTMG-EVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTI 242

HSP 2 Score: 35.039 bits (79), Expect = 9.941e-34
Identity = 19/66 (28.79%), Postives = 36/66 (54.55%), Query Frame = 2 
Query:  464 LKVKTLYRLKTLEQRWEEEGEKHKVFDGKTLQGFYLPRPCKKIRV-PMAREKRNLVKANKMVKKQG 658
            +K + LY+ KT+ Q W +E E+++    K  +G Y+ R  +++R+     E+   +  NK  K +G
Sbjct:  261 IKGRNLYKDKTMRQPWLDEEERNRALQEKHARG-YVARKTREVRIKDKENERMRRLNRNKENKSKG 325

HSP 3 Score: 24.2534 bits (51), Expect = 9.941e-34
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 1 
Query:  409 EVLWSKGEKXXXXXXXXXIKGQN 477
            E+LWS+G K         IKG+N
Sbjct:  243 EILWSRGYKPWPPLHPLLIKGRN 265
The following BLAST results are available for this feature:
BLAST of EY728104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H62_ORYSJ9.941e-3455.26Zinc finger CCCH domain-containing protein 62 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-110-F03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728104 ID=EY728104; Name=EY728104; organism=Citrus sinensis; type=EST; length=987bp
GCAAAGATTTGGATGTGGGTGTTGATGAAATTGAAGAAAAAGTAATCCAG
AAGATCATTGAAGCCGGGCAGCAAGAGAAATTGAAAGTGGAGCAATGTAA
AGTTTATTTGAGGAAGAATGGATTGAGATTGACGGGCAATAAACCCACGC
ATATTCAGCATATAAAGGAGCATCTAGAAATCTCAAATGGTGGTGGAGAG
AGAAGGTACCCAATCTTTAGCTTTGTACTGGACTGTAAAGGTGACGCTTG
CACAGGTGACGTTGTTATGTTTAAACAGAATGTTTACAAAATGTTTAACA
TAGCAGCTTGTAGTGCAAGTGGTCCCCCATGTGGCAAAAGGATTGTTGCT
GGCCGCATTGTGAAAGAAAGCTATGGAGCAGCCAAGCAACAACATACATT
TACAATAGGAGGTACTTTGGAGCAAAGGGGAGAAGCCACTCCCTCCACTT
CGTCCTCTCCTAATTAAAGGTCAAAACCCTTTATCGTCTGAAGACCTTGG
AACAGAGATGGGAAGAAGAAGGGGAAAAACACAAGGTTTTTGATGGGAAA
ACACTTCAAGGGTTTTATTTGCCACGGCCTTGTAAAAAAATTCGGGTTCC
CATGGCAAGGGAAAAAAGGAATTTGGTAAAAGCAAATAAGATGGTCAAAA
AACAAGGGTTCCAAAAGTTTGCAAAGGTAAAATGAATTTAATTTGTCAAA
AAAAAAGATGAAAATTTCTGCTCCAATAAACCGCTGGGCATGTGGATAGG
GGCAGCATAACTAAATAGAAAAAAGGGACACACGAGAGAGAACGTTAGAT
AACGAAAGAAAAGAAAGCAATATGAAGAGTGGAGGTAAAAACAGAGGAGG
AGGAGGCTAGAAACGGTACGTTTTTGGTGAAGGGACTGACACTAAGAAAC
GTGCGCAGAGAAGGTATAGAATACAAAAATATGGACGAAGAAAAAGCACG
AAGTAAGCGAAAAAGATACAAGGAAACAACGAAAGAC
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