EY754180

Overview
NameEY754180
Unique NameEY754180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754180 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 9.578e-88
Identity = 157/204 (76.96%), Postives = 174/204 (85.29%), Query Frame = 1
Query:  205 MAGGNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGTFNRDLAEYLDRKVPPNTIPVDGVFSFDHVDRATGLLNRVFQAAPQ-NEVQWGIVELEKPLSTTEVVPVIIFFHGGSFTHSSANSAIYDTFCRRLVNICKAGVVSVNYRRSPEYRYPCAYDDGWAALKWVKSRTWLQSGKDSKVYVYLARDSXWWYIXHHVAVRA 813
            MAGGNEVNLNE KR+VPLNTWVLISNFKLAY +LRRPDG+FNRDLAE+LDRKVP N+ P+DGVFSFDHVD  T LL R++Q A   ++ + G +EL KPLSTTE+VPV+IFFHGGSFTHSSANSAIYDTFCRRLV IC   VVSV+YRRSPE+RYPCAYDDGW AL WVKSR WLQSGKDS VYVYLA DS    I H+VAVRA
Sbjct:    1 MAGGNEVNLNECKRIVPLNTWVLISNFKLAYKVLRRPDGSFNRDLAEFLDRKVPANSFPLDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRA 204          
BLAST of EY754180 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.586e-74
Identity = 144/206 (69.90%), Postives = 162/206 (78.64%), Query Frame = 1
Query:  205 MAGGNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGTFNRDLAEYLDRKVPPNTIPVDGVFSFDHV-DRATGLLNRVFQAAPQNEVQWGIVELEKPLSTTEVVPVIIFFHGGSFTHSSANSAIYDTFCRRLVNICKAGVVSVNYRRSPEYRYPCAYDDGWAALKWVKSRTWLQSGKDSKVYVYLARDSXWWYIXHHVAVRAAE 819
            MAG  EVNL ESK VVPLNTWVLISNFKLAYNLLRRPDGTFNR LAE+LDRKVP N  PV+GVFSFD + DR T LL+RV++ A        I +L+ P+   E+VPVI+FFHGGSF HSSANSAIYDT CRRLV +C A VVSVNYRR+PE RYPCAYDDGWA LKWV S +WL+S KDSKV ++LA DS    I H+VAVRA E
Sbjct:    1 MAGSEEVNLIESKTVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSP-SITDLQNPVDG-EIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE 204          
BLAST of EY754180 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.907e-73
Identity = 140/207 (67.63%), Postives = 165/207 (79.71%), Query Frame = 1
Query:  205 MAGGNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGTFNRDLAEYLDRKVPPNTIPVDGVFSFDH-VDRATGLLNRVFQAAPQNEVQW-GIVELEKPLSTTEVVPVIIFFHGGSFTHSSANSAIYDTFCRRLVNICKAGVVSVNYRRSPEYRYPCAYDDGWAALKWVKSRTWLQSGKDSKVYVYLARDSXWWYIXHHVAVRAAE 819
            MA  +EVNL ES+ VVPLNTWVLISNFK+AYN+LRRPDGTFNR LAEYLDRKV  N  PVDGVFSFD  +DR   LL+RV++ A  ++ Q   I++LEKP+   ++VPVI+FFHGGSF HSSANSAIYDT CRRLV +CK  VVSVNYRR+PE  YPCAYDDGW AL WV SR+WL+S KDSKV+++LA DS    I H+VA+RA E
Sbjct:    1 MAASDEVNLIESRTVVPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDG-DIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE 206          
BLAST of EY754180 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.184e-67
Identity = 125/213 (58.69%), Postives = 158/213 (74.18%), Query Frame = 1
Query:  205 MAGGNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGTFNRDLAEYLDRKVPPNTIPVDGVFSFDHV-DRATGLLNRVFQAAPQNEVQWGIVELEKPL-------STTEVVPVIIFFHGGSFTHSSANSAIYDTFCRRLVNICKAGVVSVNYRRSPEYRYPCAYDDGWAALKWVKSRTWLQSGKDSKVYVYLARDSXWWYIXHHVAVRAAE 819
            MAG +EVN NE K VVPL+TWVLISNFKL+YN+LRR DGTF RDL EYLDR+VP N  P++GV SFDH+ D++ GL  R+++AA + + + G   + +P+          E  PVIIFFHGGSF HSSA+S IYD+ CRR V + K  VVSVNYRR+PE+RYPCAYDDGW ALKWV S+ +++SG D++  V+L+ DS    I HHVAVRAA+
Sbjct:    1 MAGSDEVNRNECKTVVPLHTWVLISNFKLSYNILRRADGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD 213          
The following BLAST results are available for this feature:
BLAST of EY754180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH9.578e-8876.96Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH1.586e-7469.90Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.907e-7367.63Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ4.184e-6758.69Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-011-F10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754180 ID=EY754180; Name=EY754180; organism=Citrus sinensis; type=EST; length=882bp
AAAAAAATGTATACACTGCTAACACAGTGAGTGAAAGAAAGTAGGCTGTG
TTCATCTTGCTTGATTATATTGTAAAGATTTTACAATTCCACAAGTTTTA
CCTCGAATTAATTATTATGAGGTTGCTGCTTCTTTGAAGATCACACATTT
GAGTTCTGGGTTATTTTTAAGGCTTTGTTCCCTCTTCTTGGGTTAGTTTC
GGCCATGGCTGGTGGTAATGAAGTCAACCTCAATGAATCTAAGAGGGTTG
TTCCTTTAAATACATGGGTCCTCATTTCCAATTTCAAGCTAGCTTACAAT
CTCCTGCGTCGGCCTGATGGAACTTTTAACCGGGACTTGGCTGAGTACCT
TGACCGGAAAGTCCCACCCAATACTATTCCTGTTGATGGGGTTTTCTCCT
TTGATCATGTTGACCGAGCCACGGGTCTTCTCAACAGGGTTTTCCAGGCT
GCCCCGCAAAATGAGGTTCAGTGGGGCATTGTAGAGCTTGAAAAGCCTTT
GAGTACCACTGAGGTTGTCCCCGTTATAATCTTTTTCCATGGTGGAAGTT
TCACTCATTCTTCTGCGAACAGTGCTATCTATGATACCTTCTGCCGCCGC
CTTGTTAACATTTGCAAGGCCGGTGTGGTCTCTGTAAATTATCGCCGATC
ACCTGAGTATAGGTATCCATGTGCTTACGATGATGGGTGGGCTGCTCTTA
AGTGGGTTAAATCAAGAACTTGGCTTCAGAGTGGAAAGGATTCTAAAGTC
TATGTTTATTTGGCCCGTGATAGTTNCTGGTGGTATATANCACACCATGT
TGCGGTGAGGGCAGCTGAANCAAAGGTGAAATATGGGGTATAATCTTCTT
CATNCATGGTTGGGGGAGAAAAGAGACTGATC
back to top