EY754161

Overview
NameEY754161
Unique NameEY754161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754161 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.696e-50
Identity = 123/235 (52.34%), Postives = 143/235 (60.85%), Query Frame = 3
Query:  222 NPNFVNFQHQN----PRPLN---PKNLLYR-LNCNKLKSSGEETKSVVNTXXXXXXXXXXXXXXXXXXXXXXXXXXALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKTSVAKEGDXVKGREGKLIVNGVVENETISWRPLLIHDT-ITVPENSXLXWVISK-*QYDSH--GPLPAR 890
            NPNF+ F  ++    P+ LN     NL  R L+C  +K S E TKS  +                             P WL+ TSDDA+TV  A+ +SLAFR F+AEPRYIPSLSMYPTFDVGDR+VAEKV+YYFRKPC+NDIVIFKSPPVLQEV YTD DVFIK  VAKEGD V+   GKL+VNGV  NE     P     T I VPENS      ++   YDSH  GPLP +
Sbjct:   30 NPNFIQFTPKSQLLFPQRLNFNTGTNLNRRTLSCYGIKDSSETTKSAPSLDSGDGGGGDGGDDDKGEVEEKNRL---FPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLK 261          
BLAST of EY754161 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.303e-31
Identity = 79/160 (49.38%), Postives = 104/160 (65.00%), Query Frame = 3
Query:  435 GW----LNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKTSVAKEGDXVKGREGKLIVNGVVENETISWRPLLIH-DTITVPENSXLXWVISK*Q-YDSH--GPLPAR 890
            GW    LNI S+DAK    A+ +SL FRS +AEP+ IPS SM PT DVGDR++AEKV+Y+FRKP  +DIVIFK+PP+L E  Y+  DVFIK  VA EGD V+  +GKL+VN  V+ E     P+    + + VPE        ++ + +DSH  GPLP +
Sbjct:  174 GWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIK 333          
BLAST of EY754161 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 5.130e-31
Identity = 76/161 (47.20%), Postives = 105/161 (65.22%), Query Frame = 3
Query:  435 GWLN----ITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVL---QEVXYTDDDVFIKTSVAKEGDXVKGREGKLIVNGVVENETISWRPLLIH-DTITVPENSXLXWVISK*Q-YDSH--GPLP 884
            GW+N    + S+DAK    A+ +S+ FRS +AEP+ IPS SMYPT D GDR++AEKV+Y+FRKP  +DIVIFK+PP+L    E  Y+ +DVFIK  VA EGD V+ R+GKL VN +V+ E     P+    + + VP+        ++ + +DSH  GPLP
Sbjct:  144 GWVNKLLSVCSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLP 304          
BLAST of EY754161 vs. ExPASy Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803) GN=lepB2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 50/147 (34.01%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  438 WLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKTSVAKEGDXVKGREGKLIVNG-VVENETISWRPLLIHDTITVPENSXLXWVISK-*QYDSH 872
            WL +     KT++ A+++++  R+FVAE RYIPS SM PT  + DR++ EK++Y  R P   +IV+F     L+   +   D FIK  +   GD V+  +G + VNG +++   I+  P   +  + VP++  L    ++   YDSH
Sbjct:   21 WLEL----GKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNF--HDAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQYLVLGDNRNNSYDSH 161          
BLAST of EY754161 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.733e-16
Identity = 50/133 (37.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  429 LPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKTSVAKEGDXVKGREGKLIVNG-VVENETISWRPLLIHDTITVPE 824
            +P       ++   ++ ALV++L  R FVAEPRYIPS SM PT + GDR+V EKV+Y+F  P   DI++F  P +LQ   Y     FIK  +A  G  V+   G +  +G  ++ E I   P      + VP+
Sbjct:    6 IPSPWQFIKENIPLLMVALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPD 138          
BLAST of EY754161 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.356e-15
Identity = 49/138 (35.51%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  465 KTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVXYTDDDVFIKTSVAKEGDXVKGREGKLIVNG-VVENETISWRPLLIHDTITVPENSXLXWVISK-*QYDSH 872
            KT+  ++V++L  R+FVAE RYIPS SM PT +V DR++ EK++Y+F  P   DI++F     L++   + ++ FIK  +   G+ V+   G++++NG  +E   I   P        VP +S L    ++   YDSH
Sbjct:   33 KTIGLSVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPADSFLVLGDNRNNSYDSH 170          
The following BLAST results are available for this feature:
BLAST of EY754161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PLSP1_ARATH1.696e-5052.34Chloroplast processing peptidase OS=Arabidopsis th... [more]
TPP2_ARATH2.303e-3149.38Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH5.130e-3147.20Thylakoidal processing peptidase 1, chloroplastic ... [more]
LEP2_SYNY32.092e-1634.01Probable signal peptidase I-2 OS=Synechocystis sp.... [more]
LEP1_SYNY32.733e-1637.59Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
LEP_PHOLA1.356e-1535.51Signal peptidase I OS=Phormidium laminosum GN=lepB... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-011-D11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754161 ID=EY754161; Name=EY754161; organism=Citrus sinensis; type=EST; length=919bp
GAGTGGATATGATGATATCTCTAAATCTCCTACCTACGCTGCCTTCCCTT
CAGAACCCTAATTTCACTTCTACCCAATCTTCCAACCCTCTCAAAAACCC
TAATTTTGCTGCAAAACCTTTTTCCAAGTCCCTCAAAAACCCTTATTTCA
CAATCCTCAACCTGCACCCAAAATCAAACCCACCCCAGTTTTCACGCACC
CGTTGGCCCTTTGTCTCTATAAATCCCAACTTTGTTAACTTTCAGCACCA
AAATCCTAGGCCCTTGAACCCCAAAAATTTACTTTACAGACTGAACTGTA
ATAAATTGAAAAGCTCCGGGGAAGAGACCAAATCAGTTGTTAATACTGGT
AGTGGTGGAGGCGGCGGCGGCGACGGCGGAGGTGGTGACGGTAGCGATGA
TGAAGAGGCGGAGGGGCAAAGTGGGGCATTGCCAGGATGGTTGAATATCA
CTTCTGATGATGCAAAAACAGTTTTGGCGGCGCTGGTTATTTCACTTGCT
TTTCGGTCGTTTGTGGCCGAGCCAAGGTACATTCCTTCGTTGTCGATGTA
TCCTACGTTTGATGTTGGAGATCGAATTGTTGCAGAAAAGGTTACCTACT
ATTTCAGAAAGCCATGCTCAAATGATATAGTAATTTTCAAAAGTCCACCG
GTTCTTCAGGAAGTANGATACACTGATGATGATGTCTTTATTAAAACGAG
TGTTGCCAAGGAAGGCGATNGTGTAAAAGGTCGTGAAGGGAAACTTATAG
TTAATGGAGTTGTAGAAAATGAGACTATATCTTGGAGGCCCCTTCTTATA
CATGACACCATTACTGTACCNGAAAACTCGNCTTTGNTATGGGTGATATC
GAAATAACAGTATGATTCGCATGGGCCCCTCCCTGCAAGAATTCATAGGA
AAACAATATTTCCCTTTTG
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