GE213244

Overview
NameGE213244
Unique NameGE213244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4590 contig Csv1_Contig4590:52..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213244 vs. ExPASy Swiss-Prot
Match: UMP3_ARATH (Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860 PE=1 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.242e-92
Identity = 170/206 (82.52%), Postives = 189/206 (91.75%), Query Frame = -2
Query:   71 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDHLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVRAVVSEHREELNRLNAFIQGGY 685
            MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD++K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERD+LRKIIVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMIGMVSIGDVVRAVV EHREEL RLNA+IQGGY
Sbjct:    1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQGGY 206          
BLAST of GE213244 vs. ExPASy Swiss-Prot
Match: Y525_METKA (Uncharacterized protein MK0525 OS=Methanopyrus kandleri GN=MK0525 PE=4 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = -2
Query:   77 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDHLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRA-------------VVSEHREELNRLNAFIQG 454
            +T  +    M +H +G++V+V   E+    GIITERD + K++ QG++       DIM++   +ITV  D +V  A++LM D  IR +P++DD G +IG+V++ D+++                 E  EEL  ++  I+G
Sbjct:   21 ETAVEIAYKMREHGIGSVVIVN--EKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQP--VITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLVATIEEEMKKFQEELEELEEVSEIIEG 156          
BLAST of GE213244 vs. ExPASy Swiss-Prot
Match: YHCV_BACSU (CBS domain-containing protein yhcV OS=Bacillus subtilis GN=yhcV PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = -2
Query:  140 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDHLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 457
            + T+ +A   M QHNVGA+ VV+ G  K   G++T+RD   +   QGR  + T V ++M+ E  L++ +P+  +  A QLM  ++IR +P++D   ++G+V++GD+
Sbjct:   18 NQTIQEAASLMKQHNVGAIPVVEQGVLK---GMLTDRDIALRTTAQGRDGQ-TPVSEVMSTE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDL 117          
BLAST of GE213244 vs. ExPASy Swiss-Prot
Match: YBP3_ACIAM (Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = -2
Query:   77 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDHLRKIIVQGRSSKS--TKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGDVVRAVVSEHREELNRLNAFIQG 451
            T+ +A K M +HN+G+LVV+    Q  V GIITERD     IV+  S++   + V   MT++ K +T   DT+V  A+ +M +N  RH+P+I   G + G+VSI D+ RA++  H  +  +    ++G
Sbjct:   21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERD-----IVKAASNRDIDSPVEKYMTKDVKGVT--EDTEVTDALDIMLNNGFRHLPIIKSNGKLYGIVSIRDLARALLDVHTMQFGKPAEEVKG 139          
BLAST of GE213244 vs. ExPASy Swiss-Prot
Match: Y653_METJA (Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii GN=MJ0653 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 37/113 (32.74%), Postives = 69/113 (61.06%), Query Frame = -2
Query:  134 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDHLRKIIVQGRSSKSTKVGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDVVR 463
            T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D++ EE    K+IT+  +  +  A ++M  + I+ +PV+ D  ++G+V+  D+VR
Sbjct:   21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDVLAEEVMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVR 125          
BLAST of GE213244 vs. ExPASy Swiss-Prot
Match: YLBB_BACSU (Uncharacterized protein ylbB OS=Bacillus subtilis GN=ylbB PE=4 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  140 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDH-LRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDV 469
            +CT  D VY+A   M   NVGA+ VV   + +++ GI+T+RD  LR I +  +   S K+ D MTE  K ++V  D  V   + LM  +++R IPV  +K + G+V++GD+
Sbjct:   14 YCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDRDLVLRGIAI--KKPNSQKITDAMTE--KPVSVEEDASVDEVLHLMASHQLRRIPVTKNKKLTGIVTLGDL 119          
The following BLAST results are available for this feature:
BLAST of GE213244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UMP3_ARATH1.242e-9282.52Uncharacterized protein At5g10860, mitochondrial O... [more]
Y525_METKA9.735e-1332.14Uncharacterized protein MK0525 OS=Methanopyrus kan... [more]
YHCV_BACSU2.833e-1235.85CBS domain-containing protein yhcV OS=Bacillus sub... [more]
YBP3_ACIAM2.833e-1236.72Uncharacterized 17.7 kDa protein in bps2 3'region ... [more]
Y653_METJA3.699e-1232.74Uncharacterized protein MJ0653 OS=Methanocaldococc... [more]
YLBB_BACSU5.342e-1137.84Uncharacterized protein ylbB OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank description93 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213244 ID=GE213244; Name=GE213244; organism=Citrus sinensis; type=EST; length=734bp
ATTAGCGTGGTCGCGGCCGAGGTACTCAAAAAACATGCATCACAACATTT
CATCTTGTCATCATCATCTAGTAACCTCCTTGTATAAAAGCATTCAGGCG
GTTTAACTCCTCACGATGCTCACTCACCACAGCACGAACAACATCTCCAA
TGGACACCATGCCTATCATTCCCTTGTCATCAATTACTGGAATGTGCCGA
ATACGGTTATCTGTCATCAATTGCATTGCCCGCAGAACTTTGGTGTCAGG
TGAGACTGTGATCAGCTTGTTCTCTTCAGTCATGATGTCCCCAACTTTAG
TTGACTTGGATGATCTTCCCTGCACTATGATCTTCCTGAGATGATCTCTC
TCTGTGATGATCCCAGCAACAGACTTTTGCTCTCCGGGTTTGACGACGAC
CAACGCTCCAACGTTATGCTGTGTCATCGACTTGACAGCATCATAGACAG
TGTCATCAGTAGTGCACCAAAGCCAAGAGCCATCCGCACCTTTACCTTTT
GCTTTCAATATGTCTGAAATTGTTGTGCTCTCGAAACCATGCTCTTCCAT
ACGAGCAGATGAAACCGACTCGAACCGCGAAGAAACTACAGGCCTAAGCA
TCGGATTGACCAAACGGATGCGTTGCAGAACAGCAGATTTGACGATATTT
CCATGGGATAGAAATGATTGAATTGCCCCTTGCATTTTTTTTCCTGTGAG
TGTGAGAGAGCAACCTGCCCGGGCGGCCGCTCGA
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