EY727926

Overview
NameEY727926
Unique NameEY727926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727926 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.305e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 3
Query:  342 ILRRESYWYNDFGSVVAVDQDPNIRQPLGVRFNKDNYTNVSTNNYALDEIE*IK 503
            +LR+ESYWY   GSVVAVDQDPN R P+ VRFNK NY NVSTNNYALDE+E +K
Sbjct:   90 VLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of EY727926 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.798e-16
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 3
Query:  342 ILRRESYWYNDFGSVVAVDQDPNIRQPLGVRFNKDNYTNVSTNNYALDEIE*IK 503
            ILR+ESYWY   GSVVA DQDPN R P+ VRFNK NY NVSTNNYALDEIE +K
Sbjct:   88 ILRKESYWYKGTGSVVACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of EY727926 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.215e-15
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 3
Query:  342 ILRRESYWYNDFGSVVAVDQDPNIRQPLGVRFNKDNYTNVSTNNYALDEIE*IK 503
            ILR+ESYWY + GSVVAVDQDP  R P+ VRF K NY N+STNNYALDE+E +K
Sbjct:   92 ILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of EY727926 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.200e-15
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  342 ILRRESYWYNDFGSVVAVDQDPNIRQPLGVRFNKDNYTNVSTNNYALDEIE 494
            I+R+ESYWY   GSVVAVDQDP  R P+ VRFNK NY NVSTNNYALDEI+
Sbjct:   72 IMRKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQ 122          
BLAST of EY727926 vs. ExPASy Swiss-Prot
Match: PSAE_HORVU (Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.356e-15
Identity = 39/51 (76.47%), Postives = 41/51 (80.39%), Query Frame = 3
Query:  342 ILRRESYWYNDFGSVVAVDQDPNIRQPLGVRFNKDNYTNVSTNNYALDEIE 494
            ILRRESYWYN  GSVV VDQDPN R P+ VRF K NY  VSTNNYALDEI+
Sbjct:   93 ILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIK 143          
BLAST of EY727926 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.222e-14
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  342 ILRRESYWYNDFGSVVAVDQDPNIRQPLGVRFNKDNYTNVSTNNYALDEIE 494
            ILRRESYW+ + GSVVAVDQDP  R P+ VRF K NY N+STNNYALDE+E
Sbjct:   89 ILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVE 139          
The following BLAST results are available for this feature:
BLAST of EY727926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAEB_NICSY1.305e-1674.07Photosystem I reaction center subunit IV B, chloro... [more]
PSAEA_NICSY3.798e-1675.93Photosystem I reaction center subunit IV A, chloro... [more]
PSAE2_ARATH3.215e-1570.37Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL4.200e-1574.51Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_HORVU9.356e-1576.47Photosystem I reaction center subunit IV, chloropl... [more]
PSAE1_ARATH1.222e-1472.55Photosystem I reaction center subunit IV A, chloro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-107-C07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727926 ID=EY727926; Name=EY727926; organism=Citrus sinensis; type=EST; length=959bp
CACGCGTCCGATTTTAATTTTCTGCAACTCTCTCCCCAGTTAAACAGAAA
CATCGAAAGAAAGAAAGAAAAAGTGATGGCTAACTGCAACATGGCATCTT
CTGCTTCTGGGTTTTCGCTGACACCCAATGTTGCGACCAATGTAAACTCA
GGTTCAAAGAGCAACATGCTGTTTTTCCCTCCAACAAGAACATCTCCAAC
AGTTTCAGGCTTGTTGTACGGGCTTCTGAGGAGGCTGCTGCCCCGCCGGC
TGCTGCCACCACCGCTGCCCCAGCTGAAGGTGAAGCATCTCCCAAGCCCA
AGCCACCTCCGATTGGACCCAAGAGAGGAGCCAAGGTATAGATTCTCAGG
AGGGAGTCCTACTGGTACAATGACTTTGGGTCTGTGGTTGCTGTTGACCA
GGATCCCAACATTCGGCAACCACTTGGGGTTCGATTCAACAAGGATAACT
ATACAAATGTATCAACGAACAACTATGCGTTGGATGAGATCGAATAAATT
AAATGAGTTATGATATTTTGATTTGCATATTATTCCCCGCTCTAGATTAA
GCCTTTGTGTGCAAGGAATGTGTTTTCTATTCCCCAAGTGAATTCTTCTT
CTGTCCACTTCGCCGTCATGTTAATCCTAATCAAGCAAAAAGATGGTCAC
AATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAAAGGGGGGCCCGCCT
CATAAGGAAACAAAGTTTAAAACCGGGGAGGATGGCCGACCAAAAAACTC
CTTATATAGGGATACCCTAAATCAACTTTTTTTGGCCCCACTTTTTTTTA
AAAGGCCCGGGAAAGGGGGAAAAACCCCGGGGATATTACCCTTTTTTATA
CTCCTTTTTTGGAAAACATCCCCCCCTTTTTCCCAACAAGGAGGGTGGAA
AAACCAAAAAAAAAAACCGCCGACGGCAGGAAGGCCACCCCCTCCCAAGA
AGATTTGGG
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