GE213242

Overview
NameGE213242
Unique NameGE213242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3937 contig Csv1_Contig3937:1706..2086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VHD+MLLAASEALA+QVT+ENF+KGLIYPPFSNIR              YELG+ATRLP+P+NLVK AESCMY+P YR+YR
Sbjct:  508 AIRVHDEMLLAASEALARQVTQENFDKGLIYPPFSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.489e-24
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VHD+MLLAASEALA+QVT+E+F+ GLIYPPF+NIR              YELG+A+RLP+P+NLV  AESCMY+P YRNYR
Sbjct:  564 AIRVHDEMLLAASEALAEQVTQEHFDNGLIYPPFTNIRKISAHIAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRNYR 647          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 54/84 (64.29%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VHDDMLLAA+EALA Q+ EE   KGLIYPP SNIR              YELG+ATRLPRP+NLVK AESCMY+P YR YR
Sbjct:  508 AIRVHDDMLLAAAEALAGQIKEEYLAKGLIYPPLSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.038e-23
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VH+DMLLAASE LA Q T+ENFEKG I+PPF+NIR              YELG+ATRLP+P++L K AESCMYTP YR+YR
Sbjct:  556 AVRVHEDMLLAASETLADQATQENFEKGSIFPPFTNIRKISARIAASVAAKAYELGLATRLPQPRDLEKYAESCMYTPVYRSYR 639          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.122e-22
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  V D+MLLAASEALA QV+EEN++KGLIYPPF+NIR              Y+LG+A+ L RP++LVK AESCMY+PGYR+YR
Sbjct:  506 AIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFTNIRKISANIAAKVAAKAYDLGLASHLKRPKDLVKYAESCMYSPGYRSYR 589          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.466e-22
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VH+DMLLAAS+ALA Q T++NFEKG I+PPF++IR              YELG+ATRLP P +LVK AE+CMYTP YRNYR
Sbjct:  553 AVRVHEDMLLAASKALADQATQDNFEKGSIFPPFTSIRKISAHIAAAVAGKAYELGLATRLPPPSDLVKYAENCMYTPVYRNYR 636          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOC_FLATR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.500e-22
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VHDDMLLAASEA A+QVT+E+F+KGLI+PPF++IR              YELG+A+RLP+P+NLV  AESCMY+P YR YR
Sbjct:  565 AIRVHDDMLLAASEAPAEQVTQEHFDKGLIFPPFTSIRKISAHIAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRIYR 648          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOX_MESCR (NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.570e-22
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VHDDMLLAASEALA QVT E+F KGLIYPPF +IR              YELG+A+RLP+P +LVK AESCMY P YR++R
Sbjct:  502 AIRVHDDMLLAASEALASQVTGEHFIKGLIYPPFKDIRKISAHIAAGVAAKAYELGLASRLPQPADLVKFAESCMYNPTYRSFR 585          
BLAST of GE213242 vs. ExPASy Swiss-Prot
Match: MAOC_SOLLC (NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.043e-21
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1
Query:   13 AAEVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPGYRNYR 264
            A  VHDDMLL ASEALA +V++ENFEKG   PPFSNIR              YELG+ATRLP+P++LV  AESCMY+P YR+YR
Sbjct:  491 AIRVHDDMLLVASEALADEVSQENFEKGTHIPPFSNIR-KISAHIAKVAAKAYELGLATRLPQPKDLVAYAESCMYSPAYRSYR 573          
The following BLAST results are available for this feature:
BLAST of GE213242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MAOX_VITVI2.854e-2667.86NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOC_FLAPR3.489e-2463.10NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_POPTR3.858e-2364.29NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
MAOC_ORYSJ5.038e-2361.90NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOX_PHAVU1.122e-2260.71NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_MAIZE1.466e-2260.71NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
MAOC_FLATR2.500e-2260.71NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_MESCR5.570e-2261.90NADP-dependent malic enzyme OS=Mesembryanthemum cr... [more]
MAOC_SOLLC8.043e-2160.71NADP-dependent malic enzyme, chloroplastic (Fragme... [more]
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Properties
Property NameValue
Genbank description91 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213242 ID=GE213242; Name=GE213242; organism=Citrus sinensis; type=EST; length=381bp
ATTAGCGTGGTCGCGGCCGAGGTACATGACGACATGCTTCTGGCAGCCTC
GGAAGCCTTGGCAAAACAAGTGACAGAAGAGAACTTTGAGAAGGGATTGA
TCTACCCACCATTTTCTAATATTAGAAAAATTTCAGCCAATATAGCTGCT
AATGTTGCTGCTAAGGCATATGAACTAGGCGTGGCTACGCGTCTCCCTCG
ACCTCAGAATCTGGTGAAGTGCGCTGAAAGTTGCATGTATACCCCTGGCT
ACCGAAACTATCGTTAAATGTTCGGCCAAAATTTCTGTCTCCGCTGAGTG
TCTTTAAGCAAAAATAATGTCAAATAACTTGTTTTGGTGTGTTATGGTGG
CTTTTGTACCTGCCCGGGCGGCCGCTCGAAA
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