GE213240

Overview
NameGE213240
Unique NameGE213240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2680 contig Csv1_Contig2680:805..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PTRB_MORLA (Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.971e-35
Identity = 67/93 (72.04%), Postives = 79/93 (84.95%), Query Frame = 1
Query:   28 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMY 306
            G SAGGLL+GAV NM  +LFK  V AVPFVDV+TTMLD +IPLTT EW+EWGDPRK+E YFYMKSYSP DNV+A++YPH+ +T G+NDPRV Y
Sbjct:  532 GGSAGGLLVGAVANMAGELFKVIVPAVPFVDVVTTMLDTSIPLTTLEWDEWGDPRKQEDYFYMKSYSPYDNVEAKDYPHMYITTGINDPRVGY 624          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PTRB_ECOLI (Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.119e-30
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query:   28 GRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVMY 306
            G SAGG+L+G  +N RP+LF   +A VPFVDV+TTMLD +IPLTT E+EEWG+P+  ++Y YMKSYSP DNV AQ YPH+LVT GL+D +V Y
Sbjct:  530 GGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQY 622          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_XENLA (Prolyl endopeptidase-like OS=Xenopus laevis GN=prepl PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.050e-20
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   22 VEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFYF-YMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            VE  SAGG+L GA+ N  P LF+A V   PF+DVL TM++ ++PLT  E EEWG+P  +E Y  Y+KSY P  N+  QNYP + +TA  ND RV
Sbjct:  534 VEAASAGGVLAGALCNSAPRLFRAVVLEAPFLDVLNTMMNVSLPLTIEEQEEWGNPLSDEKYHRYIKSYCPYQNITPQNYPCVRITAYENDQRV 627          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_MOUSE (Prolyl endopeptidase-like OS=Mus musculus GN=Prepl PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.054e-20
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   34 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFY-FYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            SAGG+L+GA+ N +P+L +A     PF+DVL TMLD T+PLT  E EEWG+P  +E +  Y+K Y P  N+K Q+YP + +TA  ND RV
Sbjct:  557 SAGGVLVGALCNSKPELLRAVTLEAPFLDVLNTMLDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPCQNIKPQHYPSVHITAYENDERV 646          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_RAT (Prolyl endopeptidase-like OS=Rattus norvegicus GN=Prepl PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.887e-20
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   34 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFY-FYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            SAGG+L+GA+ N +P+L +A     PF+DVL TM+D T+PLT  E EEWG+P  +E +  Y+K Y P  N+K Q+YP + +TA  ND RV
Sbjct:  558 SAGGVLVGALCNSKPELLRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPCQNMKPQHYPSVHITAYENDERV 647          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_PONAB (Prolyl endopeptidase-like OS=Pongo abelii GN=PREPL PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.980e-19
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   34 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFY-FYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            SAGG+L GA+ N  P+L +A     PF+DVL TM+D T+PLT  E EEWG+P  +E +  Y+K Y P  N+K Q+YP I +TA  ND RV
Sbjct:  559 SAGGVLAGALCNSNPELLRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKHYCPYQNIKPQHYPSIHITAYENDERV 648          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_MACFA (Prolyl endopeptidase-like OS=Macaca fascicularis GN=PREPL PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   34 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFY-FYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            SAGG+L GA+ N  P+L +A     PF+DVL TM+D T+PLT  E EEWG+P  +E +  Y+K Y P  N+K Q+YP + +TA  ND RV
Sbjct:  559 SAGGVLAGALCNCNPELLRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPYQNIKPQHYPSVHITAYENDERV 648          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_HUMAN (Prolyl endopeptidase-like OS=Homo sapiens GN=PREPL PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.586e-19
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   34 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFY-FYMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            SAGG+L GA+ N  P+L +A     PF+DVL TM+D T+PLT  E EEWG+P  +E +  Y+K Y P  N+K Q+YP I +TA  ND RV
Sbjct:  559 SAGGVLAGALCNSNPELVRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKRYCPYQNIKPQHYPSIHITAYENDERV 648          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: PPCEL_CHICK (Prolyl endopeptidase-like OS=Gallus gallus GN=PREPL PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.086e-17
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   34 SAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFYF-YMKSYSPVDNVKAQNYPHILVTAGLNDPRV 300
            SAGG+L GA+ N  P+L +A V   PFVDVL TM+   +PL+  E EEWG+P  +E    Y+K+Y P  N+K Q YP + +TA  ND RV
Sbjct:  575 SAGGVLAGAICNSDPELIRAVVLQAPFVDVLNTMMKTHLPLSIEEQEEWGNPLADEKCMKYIKNYCPYHNIKPQCYPSVFITAYENDQRV 664          
BLAST of GE213240 vs. ExPASy Swiss-Prot
Match: Y4SO_RHISN (Uncharacterized peptidase y4sO OS=Rhizobium sp. (strain NGR234) GN=NGR_a01580 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.734e-15
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   22 VEGRSAGGLLIGAVLNMRPDLFKAAVAAVPFVDVLTTMLDPTIPLTTAEWEEWGDPRKEEFYFYMKSYSPVDNVKA-QNYPHILVTAGLNDPRVMY 306
            +EGRSAGG  + A   +RPDLF+A +A VP  D++ T LD T+P    E  E+GDP     Y Y++SY P  N+   + YP   + A L+D +V+Y
Sbjct:  550 IEGRSAGGGTVLAAAVLRPDLFRAVLAEVPLADIIDTELDFTLPYALRETAEYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLY 645          
The following BLAST results are available for this feature:
BLAST of GE213240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PTRB_MORLA1.971e-3572.04Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1[more]
PTRB_ECOLI1.119e-3063.44Protease 2 OS=Escherichia coli (strain K12) GN=ptr... [more]
PPCEL_XENLA1.050e-2052.13Prolyl endopeptidase-like OS=Xenopus laevis GN=pre... [more]
PPCEL_MOUSE3.054e-2051.11Prolyl endopeptidase-like OS=Mus musculus GN=Prepl... [more]
PPCEL_RAT8.887e-2050.00Prolyl endopeptidase-like OS=Rattus norvegicus GN=... [more]
PPCEL_PONAB1.980e-1951.11Prolyl endopeptidase-like OS=Pongo abelii GN=PREPL... [more]
PPCEL_MACFA2.586e-1950.00Prolyl endopeptidase-like OS=Macaca fascicularis G... [more]
PPCEL_HUMAN2.586e-1951.11Prolyl endopeptidase-like OS=Homo sapiens GN=PREPL... [more]
PPCEL_CHICK1.086e-1748.89Prolyl endopeptidase-like OS=Gallus gallus GN=PREP... [more]
Y4SO_RHISN1.734e-1542.71Uncharacterized peptidase y4sO OS=Rhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank description89 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213240 ID=GE213240; Name=GE213240; organism=Citrus sinensis; type=EST; length=328bp
ATTAGCGTGGTCGCGGCCGAGGTTGAAGGAAGAAGTGCTGGGGGATTGCT
TATTGGTGCTGTCCTTAACATGAGGCCTGATTTGTTCAAGGCTGCAGTTG
CAGCAGTCCCATTCGTAGATGTCCTGACCACAATGCTGGATCCAACTATT
CCTCTTACAACTGCTGAGTGGGAGGAATGGGGTGACCCCCGGAAGGAAGA
ATTTTACTTCTACATGAAGTCATATTCGCCTGTTGATAATGTTAAGGCTC
AAAATTATCCTCACATTCTTGTCACGGCTGGCTTGAATGATCCACGTGTT
ATGTACCTGCCCGGGCGGCCGCTCGAAA
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