EY754102

Overview
NameEY754102
Unique NameEY754102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.697e-48
Identity = 99/202 (49.01%), Postives = 131/202 (64.85%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV 677
            LPI   ++++            +GETGSGK+TQL+Q LH  GYT  G+IG TQP             +E+G  LGEEVGYAIRFED TSE TLIKY+TDG+LLRE L   DL  YS II+DEAHERSLNTD+L GL++ +V  R S LK+++TSAT+D EK + FF + P  ++PG+  PV IL  +     Y + A++ ++
Sbjct:  532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSL 732          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.697e-48
Identity = 99/202 (49.01%), Postives = 131/202 (64.85%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV 677
            LPI   ++++            +GETGSGK+TQL+Q LH  GYT  G+IG TQP             +E+G  LGEEVGYAIRFED TSE TLIKY+TDG+LLRE L   DL  YS II+DEAHERSLNTD+L GL++ +V  R S LK+++TSAT+D EK + FF + P  ++PG+  PV IL  +     Y + A++ ++
Sbjct:  532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSL 732          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.669e-47
Identity = 104/229 (45.41%), Postives = 142/229 (62.01%), Query Frame = 3
Query:   15 KTLILLDSSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHPD 701
            KT      SK  +     +LPI + ++++            IGETGSGK+TQ++Q L   GYT  G IG TQP             +E G RLGEEVGYAIRFED T   T+IKY+TDG+LLREIL + +LS YSVI+LDEAHER+++TD+L GL+K+L+  R   L++++TSATLD EK S +F +C    +PG+  PV IL+ ++  + Y D AL T + I    P+
Sbjct:  496 KTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLD-LRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPE 723          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 9.670e-47
Identity = 102/214 (47.66%), Postives = 134/214 (62.62%), Query Frame = 3
Query:   60 SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGI-IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698
            S  +LP+ QY++ +            + ETGSGK+TQL Q LH  GYTK    I  TQP             +E+ VRLG+EVGY+IRFE+ TSE+T+IKYLTDG+LLRE L+ PDL+ YSVII+DEAHER+L+TDIL GLVK +   R   LK+LI+SAT+D EK S +F + P   VPG+  PV I +  +  + Y   A+ T + I    P
Sbjct:  414 SRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPD-LKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQP 626          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.675e-46
Identity = 96/203 (47.29%), Postives = 130/203 (64.04%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF-SDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV 677
            LP+    +K+            +GETGSGK+TQL+Q L   G+  SG+IG TQP              E+GV LG++VGYAIRFED TSE+T+IKY+TDG+LLRE L +  L  YS II+DEAHERSLNTD+L GL++ ++  RA  LK+++TSAT+D +K + FF  +CP   +PG+  PV + H R     Y D A++ AV
Sbjct:  441 LPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRAD-LKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHARTPVEDYVDAAVKQAV 642          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.396e-45
Identity = 96/210 (45.71%), Postives = 134/210 (63.81%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698
            +LPI + +E++            IGETGSGK+TQ++Q L   GYT  G IG TQP             +E G  LG+EVGY IRFED TS  T+IKY+TDG+LLRE L +PDL+ Y++I+LDEAHER+++TD+L GL+K+ V  R   +K+++TSATLD  K S++F + P   +PG+  PV IL+ +E  + Y D +L T + I    P
Sbjct:  588 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP 796          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.396e-45
Identity = 96/210 (45.71%), Postives = 134/210 (63.81%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698
            +LPI + +E++            IGETGSGK+TQ++Q L   GYT  G IG TQP             +E G  LG+EVGY IRFED TS  T+IKY+TDG+LLRE L +PDL+ Y++I+LDEAHER+++TD+L GL+K+ V  R   +K+++TSATLD  K S++F + P   +PG+  PV IL+ +E  + Y D +L T + I    P
Sbjct:  564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP 772          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.063e-45
Identity = 92/210 (43.81%), Postives = 134/210 (63.81%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698
            +LP+  Y E++            +GETGSGK+TQ+ Q LH  G++K+G IG TQP             +E+G +LG EVGY+IRFED TS++T+++Y+TDG+L+RE L+ PDL+ YSV+I+DEAHER+L+TDIL GL+K +   R   LK+LI+SAT+D E+ S +F   P  N+PG+   V   + +   + Y D A+ T + I    P
Sbjct:  466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFRPD-LKLLISSATMDAERFSDYFDGAPTFNIPGRKYEVTTHYTQAPEADYLDAAVVTVLQIHITEP 674          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.016e-44
Identity = 95/209 (45.45%), Postives = 130/209 (62.20%), Query Frame = 3
Query:   72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698
            LP     E++            +GETGSGK+TQL+Q L+  GY ++G+IG TQP             +E+GVRLG  VGY+IRFED T   T+IKY+TDGVLLRE L   +L  YSVII+DEAHERSLNTDIL+GL+K++++ R   +K+L+TSAT++ +K S FF   P   +PG+  PV I+  +   S Y + A+   + I    P
Sbjct:  492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLS-RRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQP 699          
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.016e-44
Identity = 98/210 (46.67%), Postives = 131/210 (62.38%), Query Frame = 3
Query:   69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698
            +LPI    E              IGETGSGK+TQ++Q L   GY   G IG TQP             +E G +LG+EVGYAIRFED TS  T+IK++TDG+LLRE L +P+LS YSVIILDEAHER+++TD+L GL+K+ +  R  +LK+LITSATL+ EK SK+F +     +PG+  PV I + ++  + Y D +L T + I    P
Sbjct:  507 SLPIFPLREAFLQAVSEHQLLVVIGETGSGKTTQMAQYLAEAGYGTRGKIGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTSPETIIKFMTDGILLRECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQ-RRPELKVLITSATLEAEKFSKYFMNAQLFIIPGRTFPVDIRYTKDPEADYLDASLITVMQIHLSEP 715          
The following BLAST results are available for this feature:
BLAST of EY754102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PRP16_HUMAN6.697e-4849.01Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN6.697e-4849.01Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX8_ARATH5.669e-4745.41Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
CDC28_SCHPO9.670e-4747.66Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG1_CAEEL3.675e-4647.29Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_MOUSE1.396e-4545.71ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN1.396e-4545.71ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
DHX16_DICDI4.063e-4543.81Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO2.016e-4445.45Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX8_DICDI2.016e-4446.67ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-010-G03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754102 ID=EY754102; Name=EY754102; organism=Citrus sinensis; type=EST; length=827bp
CACGATAATANCCTAAAACCCTAATCTTGCTCGACAGCTCCAAACCTCGA
GTTAATTGATCGATGGCGAATCTTCCGATTCTCCAATATGAAGAAAAGAT
AGTAGAAACGGTGGAGCAGAATCCAGTGGTGGTGGTTATCGGAGAGACGG
GGTCCGGCAAGAGCACGCAGCTCTCTCAGATACTCCACCGGCGTGGCTAC
ACCAAATCCGGAATTATTGGCGTTACTCAGCCTCGCCGAGTCGCTGCCGT
ATCCGTTGCCAGACGAGTTGCACAGGAACTTGGTGTTCGGCTTGGGGAGG
AAGTAGGTTATGCAATACGATTTGAGGATAGAACATCGGAAAGAACACTT
ATTAAATACCTTACTGATGGAGTTCTTCTTCGAGAAATTCTGTCTAATCC
AGATCTTAGTCCGTATTCAGTTATCATATTAGATGAAGCCCATGAGAGGA
GTCTCAACACGGACATATTGCTGGGTCTTGTGAAACGCTTGGTTAATTTG
CGAGCTTCAAAATTAAAGATTTTGATCACGTCAGCAACTCTTGATGGTGA
AAAAGTTTCCAAGTTCTTTTCAGATTGCCCCCCATTGAATGTCCCTGGAA
AGTTGTCTCCTGTGGGGATTTTGCACCAGAGGGAGCGTCCTTCAGGCTAT
TCTGACCCTGCTTTGGAAACAGCCGTGTGAATACCTGCTCGACACCCAGA
TGCGGCCTGGTGGTTTTCCTGACTGGCCCGGTCGCTTTGGGAAGTTTGTT
TCATTCCTGCCATTACCTTTTAAGGCTGGGTTGAGGGTCCCGGTTGTTGG
CCGGTATCTTCCCCTTTTGGGTTCCTT
back to top