EY754102
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 6.697e-48 Identity = 99/202 (49.01%), Postives = 131/202 (64.85%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV 677 LPI ++++ +GETGSGK+TQL+Q LH GYT G+IG TQP +E+G LGEEVGYAIRFED TSE TLIKY+TDG+LLRE L DL YS II+DEAHERSLNTD+L GL++ +V R S LK+++TSAT+D EK + FF + P ++PG+ PV IL + Y + A++ ++ Sbjct: 532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSL 732
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 6.697e-48 Identity = 99/202 (49.01%), Postives = 131/202 (64.85%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV 677 LPI ++++ +GETGSGK+TQL+Q LH GYT G+IG TQP +E+G LGEEVGYAIRFED TSE TLIKY+TDG+LLRE L DL YS II+DEAHERSLNTD+L GL++ +V R S LK+++TSAT+D EK + FF + P ++PG+ PV IL + Y + A++ ++ Sbjct: 532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSL 732
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 5.669e-47 Identity = 104/229 (45.41%), Postives = 142/229 (62.01%), Query Frame = 3 Query: 15 KTLILLDSSKPRVN*SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHPD 701 KT SK + +LPI + ++++ IGETGSGK+TQ++Q L GYT G IG TQP +E G RLGEEVGYAIRFED T T+IKY+TDG+LLREIL + +LS YSVI+LDEAHER+++TD+L GL+K+L+ R L++++TSATLD EK S +F +C +PG+ PV IL+ ++ + Y D AL T + I P+ Sbjct: 496 KTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRRLD-LRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPE 723
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 9.670e-47 Identity = 102/214 (47.66%), Postives = 134/214 (62.62%), Query Frame = 3 Query: 60 SMANLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGI-IGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698 S +LP+ QY++ + + ETGSGK+TQL Q LH GYTK I TQP +E+ VRLG+EVGY+IRFE+ TSE+T+IKYLTDG+LLRE L+ PDL+ YSVII+DEAHER+L+TDIL GLVK + R LK+LI+SAT+D EK S +F + P VPG+ PV I + + + Y A+ T + I P Sbjct: 414 SRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPD-LKVLISSATIDAEKFSAYFDEAPVFYVPGRRYPVDIYYTPQPEANYIQAAITTILQIHTTQP 626
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 3.675e-46 Identity = 96/203 (47.29%), Postives = 130/203 (64.04%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFF-SDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV 677 LP+ +K+ +GETGSGK+TQL+Q L G+ SG+IG TQP E+GV LG++VGYAIRFED TSE+T+IKY+TDG+LLRE L + L YS II+DEAHERSLNTD+L GL++ ++ RA LK+++TSAT+D +K + FF +CP +PG+ PV + H R Y D A++ AV Sbjct: 441 LPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRAD-LKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHARTPVEDYVDAAVKQAV 642
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.396e-45 Identity = 96/210 (45.71%), Postives = 134/210 (63.81%), Query Frame = 3 Query: 69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698 +LPI + +E++ IGETGSGK+TQ++Q L GYT G IG TQP +E G LG+EVGY IRFED TS T+IKY+TDG+LLRE L +PDL+ Y++I+LDEAHER+++TD+L GL+K+ V R +K+++TSATLD K S++F + P +PG+ PV IL+ +E + Y D +L T + I P Sbjct: 588 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP 796
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.396e-45 Identity = 96/210 (45.71%), Postives = 134/210 (63.81%), Query Frame = 3 Query: 69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698 +LPI + +E++ IGETGSGK+TQ++Q L GYT G IG TQP +E G LG+EVGY IRFED TS T+IKY+TDG+LLRE L +PDL+ Y++I+LDEAHER+++TD+L GL+K+ V R +K+++TSATLD K S++F + P +PG+ PV IL+ +E + Y D +L T + I P Sbjct: 564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEP 772
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.063e-45 Identity = 92/210 (43.81%), Postives = 134/210 (63.81%), Query Frame = 3 Query: 69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698 +LP+ Y E++ +GETGSGK+TQ+ Q LH G++K+G IG TQP +E+G +LG EVGY+IRFED TS++T+++Y+TDG+L+RE L+ PDL+ YSV+I+DEAHER+L+TDIL GL+K + R LK+LI+SAT+D E+ S +F P N+PG+ V + + + Y D A+ T + I P Sbjct: 466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFRPD-LKLLISSATMDAERFSDYFDGAPTFNIPGRKYEVTTHYTQAPEADYLDAAVVTVLQIHITEP 674
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 2.016e-44 Identity = 95/209 (45.45%), Postives = 130/209 (62.20%), Query Frame = 3 Query: 72 LPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698 LP E++ +GETGSGK+TQL+Q L+ GY ++G+IG TQP +E+GVRLG VGY+IRFED T T+IKY+TDGVLLRE L +L YSVII+DEAHERSLNTDIL+GL+K++++ R +K+L+TSAT++ +K S FF P +PG+ PV I+ + S Y + A+ + I P Sbjct: 492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLS-RRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCSDYVEAAVRQVLQIHLSQP 699
BLAST of EY754102 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.016e-44 Identity = 98/210 (46.67%), Postives = 131/210 (62.38%), Query Frame = 3 Query: 69 NLPILQYEEKIXXXXXXXXXXXXIGETGSGKSTQLSQILHRRGYTKSGIIGVTQPXXXXXXXXXXXXXQELGVRLGEEVGYAIRFEDRTSERTLIKYLTDGVLLREILSNPDLSPYSVIILDEAHERSLNTDILLGLVKRLVNLRASKLKILITSATLDGEKVSKFFSDCPPLNVPGKLSPVGILHQRERPSGYSDPALETAV*IPARHP 698 +LPI E IGETGSGK+TQ++Q L GY G IG TQP +E G +LG+EVGYAIRFED TS T+IK++TDG+LLRE L +P+LS YSVIILDEAHER+++TD+L GL+K+ + R +LK+LITSATL+ EK SK+F + +PG+ PV I + ++ + Y D +L T + I P Sbjct: 507 SLPIFPLREAFLQAVSEHQLLVVIGETGSGKTTQMAQYLAEAGYGTRGKIGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTSPETIIKFMTDGILLRECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQ-RRPELKVLITSATLEAEKFSKYFMNAQLFIIPGRTFPVDIRYTKDPEADYLDASLITVMQIHLSEP 715 The following BLAST results are available for this feature:
BLAST of EY754102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >EY754102 ID=EY754102; Name=EY754102; organism=Citrus sinensis; type=EST; length=827bpback to top |