GE213239

Overview
NameGE213239
Unique NameGE213239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1367 contig Csv1_Contig1367:61..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_ARATH (V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.219e-50
Identity = 97/115 (84.35%), Postives = 110/115 (95.65%), Query Frame = 3
Query:   33 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVA 377
            SALIAMIADEDTVVGFL+AGVGNVD+RRKTNYLIVDSKTT++QIEDAFKEF++R+DIAI+L+SQY+AN IRFLVDS+NKP+PAILEIPSKDHPYDPA DSVLSRVK L S ESV+
Sbjct:   12 SALIAMIADEDTVVGFLMAGVGNVDIRRKTNYLIVDSKTTVRQIEDAFKEFSARDDIAIILLSQYIANMIRFLVDSYNKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSAESVS 126          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_CAEEL (Probable V-type proton ATPase subunit F OS=Caenorhabditis elegans GN=vha-9 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.779e-33
Identity = 64/114 (56.14%), Postives = 91/114 (79.82%), Query Frame = 3
Query:   27 AASALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVE 368
            A   ++A+I DEDTVVGFLL GVG ++  RK NYLIVD +TT+++IE+AF  F +R+DIAI+LI+Q++A  IR+ VD+H + IPA+LEIPSK+ PYDP++DS+L+R + L + E
Sbjct:    5 AKGKILAVIGDEDTVVGFLLGGVGELNKARKPNYLIVDKQTTVQEIEEAFNGFCARDDIAIILINQHIAEMIRYAVDNHTQSIPAVLEIPSKEAPYDPSKDSILNRARGLFNPE 118          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_DICDI (V-type proton ATPase subunit F OS=Dictyostelium discoideum GN=vatF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 64/108 (59.26%), Postives = 87/108 (80.56%), Query Frame = 3
Query:   33 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 356
            +AL+A+I DED V GFLLAGVG  D ++  N+L+VDSKT+  +IE AFK FT+R DIAI++I+Q VA+ IR+L+D +++ IP ILEIPSKDHPYDP +DSV+ +VK +
Sbjct:    9 TALVAVIGDEDVVTGFLLAGVGQKDKKKNENFLVVDSKTSQAKIETAFKSFTTRNDIAIIMITQKVADEIRYLIDEYHQVIPTILEIPSKDHPYDPKKDSVMLKVKKM 116          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_RAT (V-type proton ATPase subunit F OS=Rattus norvegicus GN=Atp6v1f PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 374
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_MOUSE (V-type proton ATPase subunit F OS=Mus musculus GN=Atp6v1f PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 374
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R K + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDL 118          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_BOVIN (V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 374
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_HUMAN (V-type proton ATPase subunit F OS=Homo sapiens GN=ATP6V1F PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 6.291e-31
Identity = 58/112 (51.79%), Postives = 85/112 (75.89%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 374
            LIA+I DEDTV GFLL G+G ++  R  N+L+V+  TTI +IED F++F +R+DI I+LI+QY+A  +R  +D+H + IPA+LEIPSK+HPYD A+DS+L R + + + E +
Sbjct:    7 LIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQQSIPAVLEIPSKEHPYDAAKDSILRRARGMFTAEDL 118          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_ANOGA (V-type proton ATPase subunit F OS=Anopheles gambiae GN=Vha14 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.402e-30
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVASDR 386
            LI++I DEDT VGFLL GVG ++  R  N+++VD  T + +IED FK F  R+DI I+LI+Q  A  IR ++DSH  P PA+LEIPSKDHPYD ++DS+L R K + + E + ++R
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSEIEDCFKRFIKRDDIDIILINQNYAELIRHVIDSHTAPTPAVLEIPSKDHPYDASKDSILRRAKGMFNPEDMIANR 126          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF_MANSE (V-type proton ATPase subunit F OS=Manduca sexta GN=VHA14 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.550e-29
Identity = 55/112 (49.11%), Postives = 82/112 (73.21%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 374
            LI++I DEDT VGFLL G+G ++  R  N+++VD  T + +IE+ FK F  R+DI I+LI+Q VA  +R ++D+H  P+P++LEIPSKDHPYD ++DS+L R K + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGIGEINKNRHPNFMVVDKNTPVSEIEECFKRFVKRDDIDIILINQNVAELVRHVIDAHTAPVPSVLEIPSKDHPYDASKDSILRRAKGMFNPEDL 122          
BLAST of GE213239 vs. ExPASy Swiss-Prot
Match: VATF1_DROME (V-type proton ATPase subunit F 1 OS=Drosophila melanogaster GN=Vha14 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.550e-29
Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = 3
Query:   39 LIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 374
            LI++I DEDT VGFLL GVG ++  R  N+++VD  T + ++ED FK F  R+DI I+LI+Q  A  IR ++D+H  P+PA+LEIPSKDHPYD ++DS+L R + + + E +
Sbjct:   11 LISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILINQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPEDL 122          
The following BLAST results are available for this feature:
BLAST of GE213239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
VATF_ARATH1.219e-5084.35V-type proton ATPase subunit F OS=Arabidopsis thal... [more]
VATF_CAEEL8.779e-3356.14Probable V-type proton ATPase subunit F OS=Caenorh... [more]
VATF_DICDI4.357e-3259.26V-type proton ATPase subunit F OS=Dictyostelium di... [more]
VATF_RAT2.162e-3152.68V-type proton ATPase subunit F OS=Rattus norvegicu... [more]
VATF_MOUSE2.162e-3152.68V-type proton ATPase subunit F OS=Mus musculus GN=... [more]
VATF_BOVIN4.817e-3151.79V-type proton ATPase subunit F OS=Bos taurus GN=AT... [more]
VATF_HUMAN6.291e-3151.79V-type proton ATPase subunit F OS=Homo sapiens GN=... [more]
VATF_ANOGA1.402e-3051.72V-type proton ATPase subunit F OS=Anopheles gambia... [more]
VATF_MANSE1.550e-2949.11V-type proton ATPase subunit F OS=Manduca sexta GN... [more]
VATF1_DROME1.550e-2950.00V-type proton ATPase subunit F 1 OS=Drosophila mel... [more]

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Properties
Property NameValue
Genbank description88 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213239 ID=GE213239; Name=GE213239; organism=Citrus sinensis; type=EST; length=505bp
ATTAGCGTGGTCGCGGCCGAGGTACCGCTGCCTCGGCGCTCATCGCTATG
ATCGCAGATGAGGACACTGTAGTTGGATTTTTGCTTGCTGGAGTTGGGAA
TGTTGACTTGCGGAGGAAGACAAATTACCTTATTGTGGACTCAAAAACAA
CTATAAAGCAAATTGAAGATGCATTTAAAGAGTTCACATCCAGGGAGGAT
ATCGCAATAGTTCTAATTAGCCAATATGTTGCAAACAGGATAAGGTTTTT
GGTTGATAGCCATAACAAGCCGATCCCTGCAATTTTGGAGATACCTTCCA
AGGATCATCCGTATGATCCTGCACAAGATTCAGTTCTTTCACGAGTGAAG
AACCTCGTCTCTGTAGAATCTGTGGCATCTGACAGGCGCTGAGCTTAGAT
ATACAGTGGTGTCTCTGTTTAATCTCCTTTCCCTCGACTGCATATTTATA
TAGTTACATATATGATTCTTCCTATATTTGTACCTGCCCGGGCGGCCGCT
CGAAA
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