GE213237

Overview
NameGE213237
Unique NameGE213237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5917 contig Csv1_Contig5917:283..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213237 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.609e-37
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1 
Query:   15 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLPG 281
            M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAAQR+QLAS+YKGEAEKILQVKRAEAEAEAKYL G
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGG 89
The following BLAST results are available for this feature:
BLAST of GE213237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO1.609e-3787.64Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
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Properties
Property NameValue
Genbank description86 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213237 ID=GE213237; Name=GE213237; organism=Citrus sinensis; type=EST; length=410bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTTGGCTTCAGCTTCAGCTTCTGC
TCTTTTAACTTGGAGAATCTTCTCAGCTTCCCCTTTATATACACTAGCAA
GCTGAAGCCTTTGAGCCGCATTGATCTCATTCATTGCCTTGCGCACAGCA
GGATCAGGTATAATGTCTACCATCAATATGTGCTCAATGCTATATCCATA
TGCACCCATCACCTTCTCAAGTTCCTCCAAAACAGCCTTAGCAACTTCGC
CTTTTTGTTCAAAGAGCTCATCCAATGTCATTCTTGGAACAAGAGCACGA
ACCACATCAAACACATAAGCCTGGATCTGCTCTTTGGGGTTCTGCAACTC
ATAAAATGCATCATCAGCATTTGCTCTGACAATCCGGTACCTCGGCCGCG
ACCACGCTAA
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