EY754082

Overview
NameEY754082
Unique NameEY754082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.078e-66
Identity = 117/165 (70.91%), Postives = 135/165 (81.82%), Query Frame = 2
Query:   74 VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFI 568
            +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+  NGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLI + WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GC D+ QV+  VGE   EYP++F+R++GF   RQ   ISFI
Sbjct:    9 IATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFI 173          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.839e-66
Identity = 117/166 (70.48%), Postives = 137/166 (82.53%), Query Frame = 2
Query:   74 VATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIA NGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLI  GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G  D++QVL  + +   EYP SF+R++GF   RQ   ISFIA
Sbjct:    9 VTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIA 174          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.192e-65
Identity = 119/167 (71.26%), Postives = 140/167 (83.83%), Query Frame = 2
Query:   71 TVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            TVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+A NGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GC DATQVL  + E    YP S +R++GF  +RQ   ISFIA
Sbjct:   10 TVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIA 176          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.530e-65
Identity = 118/167 (70.66%), Postives = 138/167 (82.63%), Query Frame = 2
Query:   71 TVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            TVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIA NGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+    IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVL  + E    YP +F+R++GF  +RQ   ISFIA
Sbjct:   10 TVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIA 176          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.541e-64
Identity = 114/168 (67.86%), Postives = 138/168 (82.14%), Query Frame = 2
Query:   71 TVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            + A A R+++AQASMVAPFTGLKS+++FP TKK NN DITS+A NGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+ +GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GC DATQVL  V E    YP +++R++GF   RQ   ISFIA
Sbjct:    8 SAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIA 175          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.457e-63
Identity = 118/169 (69.82%), Postives = 138/169 (81.66%), Query Frame = 2
Query:   71 TVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIA NGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+   W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GC D++QVL  + E    YP SF+R++GF   RQ   ISFIA
Sbjct:   10 TVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIA 177          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.240e-63
Identity = 118/169 (69.82%), Postives = 138/169 (81.66%), Query Frame = 2
Query:   71 TVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIA NGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+   W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GC D++QVL  + E    YP SF+R++GF   RQ   ISFIA
Sbjct:   10 TVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIA 177          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.537e-63
Identity = 113/167 (67.66%), Postives = 134/167 (80.24%), Query Frame = 2
Query:   71 TVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            + A A R+++AQA+MVAPFTGLKS+++FP ++K N DITSIA NGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL+ SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GC DATQVL  V E    YP ++VR++GF   RQ   ISFIA
Sbjct:    8 SAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIA 174          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 7.232e-63
Identity = 114/167 (68.26%), Postives = 133/167 (79.64%), Query Frame = 2
Query:   71 TVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            + A A R+++ QASMVAPFTGLKSS+ FP TKK N DITSIA NGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+ +GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GC DATQVL  V E    YP ++VR++GF   RQ   ISFIA
Sbjct:    8 SAAVATRSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIA 174          
BLAST of EY754082 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.232e-63
Identity = 112/168 (66.67%), Postives = 136/168 (80.95%), Query Frame = 2
Query:   71 TVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIACNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIPSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCXDATQVLN*VGEVPXEYPHSFVRLVGFVPRRQGPGISFIA 571
            + A A R+++AQASMVAPFTGLKS+++FP TKK NN DITS+A NGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+ +GW+PCLEFE E G+VYREH+ SPGYYDGRYWTMWKLPM+GC D TQVL  V E    YP +++R++GF   RQ   ISFIA
Sbjct:    8 SAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIA 175          
The following BLAST results are available for this feature:
BLAST of EY754082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RBS_LACSA1.078e-6670.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.839e-6670.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.192e-6571.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE4.530e-6570.66Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU6.541e-6467.86Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_PYRPY1.457e-6369.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP4.240e-6369.82Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL5.537e-6367.66Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS2A_SOLLC7.232e-6368.26Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS0_SOLTU7.232e-6366.67Ribulose bisphosphate carboxylase small chain C, c... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-010-E04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754082 ID=EY754082; Name=EY754082; organism=Citrus sinensis; type=EST; length=817bp
GNCCGGNAATCACGGCTCGACCCACGCGTCCGGCAAGTACTAAGGGCTTC
CTCAATGATCTCATCGCTTCACCGTTGCCACCGCGAACCGCGCCAGCCTT
GCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGC
TTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCTTGCA
ACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAG
AAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCT
CAAGGAAATCAATTACCTTATCCCTTCCGGCTGGATTCCCTGCTTGGAAT
TCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGA
TACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTG
CNCAGATGCAACCCAGGTTTTGAACTAGGTTGGGGAGGTCCCNNATGAAT
ACCCACATTCTTTCGTCCGACTTGTCGGGTTTGTCCCCCGGCGGCAAGGG
CCGGGCATCAGTTTCATTGCTGGCCNGCCCCCAGGCGTCTAGGGTCCCGA
CTTGGTTTGGGGTCCCGCCCCTGCCATCTTGGTGGTCTTTTTTATGTGGA
ACCCCCCTGACGGTTCTTCGGTCAATGGGGGGTGCGGTTCGGGTGGTGTT
TCGGCCTCTCGCTGCTGGTTGCTGGGGCTGCCACTGTTTTGGGTCTCCTT
CCCGCGTCTGCCTTTTTTTCTTGCTTTTTCGTTTATTGTTACTAATGGCC
GCCTCTGTTCCTCTCTT
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