EY754080

Overview
NameEY754080
Unique NameEY754080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 7.964e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1
Query:  214 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   56 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.040e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
Query:  217 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 1.040e-43
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 1
Query:  178 GGVYXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            GGV         + ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   48 GGVEKKKKRVKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 1.040e-43
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1
Query:  214 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1
Query:  214 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 176.407 bits (446), Expect = 1.774e-43
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1
Query:  214 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 2.317e-43
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1
Query:  214 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            +VETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.317e-43
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 1
Query:  172 DGGGVYXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            +GGG          +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 EGGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.317e-43
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 1
Query:  172 DGGGVYXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            +GGG          +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   34 EGGGEKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of EY754080 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.952e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1
Query:  214 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 489
            N+ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGTKAVTKFTSS
Sbjct:   47 NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTSS 138          
The following BLAST results are available for this feature:
BLAST of EY754080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_GOSHI7.964e-4498.91Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC1.040e-43100.00Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B3_ARATH1.040e-4388.46Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]
H2B1_ARATH1.040e-4397.83Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B1_MEDTR1.774e-4397.83Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B11_ARATH1.774e-4397.83Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR2.317e-4396.74Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B11_ORYSJ2.317e-4385.85Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI2.317e-4385.85Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B8_ARATH3.952e-4395.65Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-010-D12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754080 ID=EY754080; Name=EY754080; organism=Citrus sinensis; type=EST; length=850bp
CGNNTAATTTTTTGTCTATCAAATTCAGAAGAATATTCCCCCGCCCTTCA
GTTTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCCGAGAAGAAGCCAG
CGGAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGAGAAGAGGCCGAAA
GCTGAGAAGAAGATCTTTTAAGATGGCGGCGGCGTCTATAAAAAGAAGAG
GAAGTTGAAGAAGAACGTGGAGACGTACAAGATCTACATTTTCAAGGTCC
TGAAGCAGGTTCATCCCGATATCGGTATCTCCAGCAAGGCCATGGGCATC
ATGAACAGTTTCATCAACGATATCTTCGAGAAATTGGCCCAAGAGGCGTC
TCGTCTCGCGAGGTACAACAAGAAGCCGACGATCACGTCGAGGGAGATCC
AGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAAGCACGCCGTG
TCGGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCTCTTGATTTTGTGC
AATTTTTTTGTCTTGTTAGTGTTCCGTGTTCTTTTGAAATTGTTCCTTTT
GTTACTTTTTAGCCGCCCCGCCCTACCTAAGGTTTGCTTGTGTTAATGCT
TCTTATGGCCCGATTAATGAAAACTTATTGGCTTTTAAAATCGNGATCTG
ATTCTCTTTGTGTTCTGATTATTGAAATGGGTATTGGATTTTGGTGATTT
GAAAAAAAAAAAAAAAAGGCGGGCGGTTTTTTAGGTTCCAGCTTACTTAC
GCGTGCGTGCGACGGTTTAGCTTTTCTATTGGGTGCCCCTAATTCAATCA
CTGGGCGGGGTGTTTCACCGTCTGGTCTGGGGAAACCTTGCGGTTCCAAC
back to top