EY727852

Overview
NameEY727852
Unique NameEY727852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1002
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL3_RAT (Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.645e-25
Identity = 85/220 (38.64%), Postives = 124/220 (56.36%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF  N  +VT+YA+LG  A+ + LNETEVT +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A VQ LG +  VD      P+ +D+AVIMYTSGSTG+PKGVM++H N++A ++ +   +P LG +DVY G +P   +L  +  L     G     R GY     L   S+K+KKG++G  SVL  +  A  P+
Sbjct:  174 IAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGVIVHTMAAVQALGVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHG----CRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPE 385          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL3_PONAB (Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 8.165e-25
Identity = 82/220 (37.27%), Postives = 126/220 (57.27%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF  N  +VT+YA+LG  A+ ++LNETEVT +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A V+ LG +  ++      P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P+LG +DVY G +P   +L  +  L     G     R GY     L   S+K+KKG++G  S+L  +  A  P+
Sbjct:  174 IAAQACFMYNFQLVTLYATLGGPAIVHALNETEVTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGIIVHTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDVYIGYLPLAHVLELSAELVCLSHG----CRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAVPE 385          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL3_HUMAN (Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 8.165e-25
Identity = 82/220 (37.27%), Postives = 126/220 (57.27%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF  N  +VT+YA+LG  A+ ++LNETEVT +I  SKEL   KL D+   +  ++H+I +D   P+     E      + + A V+ LG +  ++      P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ +   +P+LG +DVY G +P   +L  +  L     G     R GY     L   S+K+KKG++G  S+L  +  A  P+
Sbjct:  174 IAAQACFMYNFQLVTLYATLGGPAIVHALNETEVTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGIIVHTMAAVEALGAKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDVYIGYLPLAHVLELSAELVCLSHG----CRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAVPE 385          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.819e-24
Identity = 83/220 (37.73%), Postives = 124/220 (56.36%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF  N  +VT+YA+LG  A+ + LNETEVT +I  SKEL   KL ++   +  ++H+I +D   P+     E      + + A VQ LG +  V+      P+ +D+AVIMYTSGSTG+PKGVM++H N++A ++ +   +P LG +DVY G +P   +L  +  L     G     R GY     L   S+K+KKG++G  SVL  +  A  P+
Sbjct:  174 IAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNIIT-SKELLQTKLKEIVSLVPRLRHIITVDGKPPTWS---EFPKGVIVHTMAAVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHG----CRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPE 385          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL4_HUMAN (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.430e-23
Identity = 81/220 (36.82%), Postives = 122/220 (55.45%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVS----ADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF+ N  +VT+YA+LG+EA+ + LNE+E + +I   + L+ KL      +  VKH+I +D     A++  E    ++I S   V+ LG  NP +   P S    +D+A++MYTSGSTG PKGVMM H N++A ++     +P LG KD Y G +P   +L     +   F  G    R GY   L L   S+K+KKG++G  +VL  +  A  P+
Sbjct:  165 IAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKTALLDISCVKHIIYVDNK---AINKAEYPEGFEIHSMQSVEELG-SNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISC-FTYGC---RIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPE 376          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL4_RAT (Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.904e-22
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE---NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF+ N  +VT+YA+LG+EA+ + LNE+E + +I   + L+ KL      ++ VKH+I +D      ++  E     +I S   V+ LG +   + +    P  +D+A++MYTSGSTG PKGVMM H N++A ++     +P LG KD Y G +P   +L     +   F  G    R GY   L L   S+K+KKG++G  +VL  +  A  P+
Sbjct:  124 IAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDNK---TINRAEYPEGLEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISC-FTYGC---RIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPE 335          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL4_MOUSE (Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.441e-21
Identity = 79/219 (36.07%), Postives = 119/219 (54.34%), Query Frame = 3
Query:   39 VRLQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKDVYFG-IPYLWLLFWN*YLKT*FAGGWNPNRNGYPF*LPLI-PSTKLKKGTQGKASVLGASDEALCPK 677
            +  Q CF+ N  +VT+YA+LG EA+ + LNE+E + +I   + L+ KL      ++ VKH+I +D      ++  E     +I S   V+ LG   EN  V    P  +D+A++MYTSGSTG PKG+MM H N++A ++     +P LG KD Y G +P   +L     +   F  G    R GY   L L   S+K+KKG++G  +VL  +  A  P+
Sbjct:  165 IAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASYLITSVELLESKLKAALVDINCVKHIIYVDNK---TINRAEYPEGLEIHSMQSVEELGAKPENLSVPPSRPTPSDMAIVMYTSGSTGRPKGLMMHHTNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISC-FTYGC---RIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPE 376          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: LCF1_SCHPO (Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe GN=lcf1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.667e-18
Identity = 51/146 (34.93%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   48 QGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ-SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSAVMTIVPDLGSKD 482
            + C  +++T+VT Y +LGEE L +SL E+ V  +      LK LV+   ++++++ +I  +      + ++++     K+  FAD + +    PV+ D P   ++  IMYTSGSTGLPKGV+++H N++A V+A++  VP++ SKD
Sbjct:  139 EACLSQSMTIVTAYDTLGEEGLLHSLRESGVRGMYTEGHLLKTLVNPLKEIESLEVIIYRNDAKEEDIKTIQEIRPNLKLIKFADFEKMSP--PVEPDPPSPEEICCIMYTSGSTGLPKGVILSHKNMVAIVTAIVKHVPEVTSKD 282          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: FCSA_DICDI (Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.381e-16
Identity = 40/122 (32.79%), Postives = 74/122 (60.66%), Query Frame = 3
Query:   78 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVS 443
            V +YA+LG  A+ Y +N +E++ ++C  K ++K++ + G   T+K ++  D    + +   + +   K+   +D + LG +NP   + P   D+  ++YTSGSTG PKGVM+TH N+++ V+
Sbjct:  140 VALYATLGANAIEYVVNHSEISVLLCEGKNVEKILSMPGT--TIKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVA 259          
BLAST of EY727852 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.660e-15
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   48 QGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ----LDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAPVSA 446
            QGCF  ++ +V +Y +LG EA+ Y +N+ E++ V     E  KL+ L G     +  +K ++ MDA     V   ++ G  ++TS   ++ LGR N      P   D+AVI +TSG+TG PKG M+TH N+++  SA
Sbjct:  165 QGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVDKPEKAKLL-LEGVENKLIPGLKIIVVMDAYGSELVERGQRCGV-EVTSMKAMEDLGRANRRKPKPPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSA 299          
The following BLAST results are available for this feature:
BLAST of EY727852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ACSL3_RAT1.645e-2538.64Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norv... [more]
ACSL3_PONAB8.165e-2537.27Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abeli... [more]
ACSL3_HUMAN8.165e-2537.27Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapien... [more]
ACSL3_MOUSE1.819e-2437.73Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]
ACSL4_HUMAN3.430e-2336.82Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
ACSL4_RAT2.904e-2235.16Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norv... [more]
ACSL4_MOUSE1.441e-2136.07Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculu... [more]
LCF1_SCHPO5.667e-1834.93Long-chain-fatty-acid--CoA ligase 1 OS=Schizosacch... [more]
FCSA_DICDI2.381e-1632.79Fatty acyl-CoA synthetase A OS=Dictyostelium disco... [more]
ACSL1_HUMAN7.660e-1536.50Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-E01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727852 ID=EY727852; Name=EY727852; organism=Citrus sinensis; type=EST; length=1002bp
GGGCGGGTCCGGGTCCGGGAATTCCGGGTCGACCCCGCGTCCGATTGCAG
GGTTGCTTCAGACGCAATGTCACAGTGGTGACCATATATGCATCCTTAGG
GGAGGAAGCACTGTGCTATTCTTTGAATGAGACCGAGGTTACAACTGTGA
TTTGTGGGAGCAAAGAACTGAAAAAGTTGGTAGACTTAAGTGGACAACTT
GACACTGTGAAACATGTGATATGTATGGACGCTAATATTCCATCTGCTGT
CTCATCAGTTGAGCAGAGTGGTCGCTGGAAGATCACTTCGTTTGCTGATG
TGCAGATTCTTGGCAGAGAAAATCCTGTTGATGCTGACTATCCTGTTTCA
GCTGATGTTGCAGTTATAATGTATACAAGTGGAAGTACTGGTTTGCCCAA
GGGTGTAATGATGACACACGGCAATGTCTTAGCCCCAGTTTCTGCAGTCA
TGACAATTGTTCCTGACCTGGGAAGCAAGGATGTTTATTTTGGCATACCC
TACCTCTGGCTCCTGTTCTGGAATTAGTACCTGAAAACCTAATTTGCTGG
GGGTTGGAACCCCAATAGGAATGGGTACCCCTTTTGACTCCCACTGATAC
CCTCAACCAAATTAAAAAAGGGAACCCAGGGGAAAGCATCTGTTTTGGGG
GCAAGTGATGAGGCCCTCTGTCCCAAAAAAAAGCCACAGAGGGAAACAAA
AGGGAGGAGACAGAAAAAGGAATGCGAAAAGGGGGGCTTTAACAGCAGAA
GTGATAGTCAAATGCCGAAATGACCCAGAACACAGATCGAAAAGAAAAGG
GAAAAGCCGAGACGGACGGCCATGAGACCCGGAACACAACCGATAGTGGG
AGATCCACCCTGAGTGATTTGACCAAAGTCTCAAATGGTCGATACAACGG
CAAAGAAAGAAAAATACAGTGACATATATACTATTCAAAAGGAAGAGACA
TCTATGATTTCATAAGACAAGGATCAAGCCAGCGTAAGAATATAAACAGA
CA
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