EY727843

Overview
NameEY727843
Unique NameEY727843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length970
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.706e-18
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  284 QGRRVSFKNALIVMTSNVGSTTIAKGRHGSIGFLLEDNE 400
            QGRRVSFKNALI+MTSNVGS  IAKGRHGSIGF+L+D+E
Sbjct:  762 QGRRVSFKNALIIMTSNVGSLAIAKGRHGSIGFILDDDE 800          

HSP 2 Score: 41.5874 bits (96), Expect = 5.706e-18
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 3
Query:  399 KSTSYAGMKTLVVEELKAYFRPELL 473
            ++ SY GMK LVVEELK YFRPELL
Sbjct:  801 EAASYTGMKALVVEELKNYFRPELL 825          

HSP 3 Score: 88.9669 bits (219), Expect = 4.576e-17
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 150
            EEGG+LTEAIRRRPFT++L DEIEKAHPDIFNILLQ+FEDGHLTDS
Sbjct:  716 EEGGMLTEAIRRRPFTVVLFDEIEKAHPDIFNILLQLFEDGHLTDS 761          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.922e-15
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 153
            EEGG LTEAIRR+P++++LLDE+EKAHPD+FNILLQV EDG LTDSH
Sbjct:  657 EEGGYLTEAIRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSH 703          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.279e-15
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 153
            EEGG LTEA+RR+P++++LLDE+EKAHPD+FN+LLQV EDG LTDSH
Sbjct:  657 EEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSH 703          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.305e-15
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 153
            EEGG LTEA+RRRP++++L DEIEKAHPD+FNILLQ+ +DG LTDSH
Sbjct:  647 EEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH 693          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.305e-15
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 153
            EEGG LTEA+RRRP++++L DEIEKAHPD+FNILLQ+ +DG LTDSH
Sbjct:  647 EEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH 693          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.627e-14
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDSH 153
            EEGG LTEA+RR+P++++LLDE+EKAH D+FNILLQV EDG LTDSH
Sbjct:  657 EEGGYLTEAVRRKPYSVILLDEVEKAHSDVFNILLQVLEDGRLTDSH 703          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.125e-14
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTD 147
            EEGG LTEA+RRRP++L+LLDE+EKAHPD+FNILLQV +DG LTD
Sbjct:  657 EEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTD 701          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.125e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 150
            EEGG LTEA+RRRP+ ++L DEIEKAHPD+FNILLQVF+DG LTDS
Sbjct:  658 EEGGQLTEALRRRPYAVVLFDEIEKAHPDVFNILLQVFDDGRLTDS 703          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB_ENTFA (Chaperone protein clpB OS=Enterococcus faecalis GN=clpB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.125e-14
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 150
            EEGG LTEA+RR P+T++LLDEIEKAHPD+FNILLQV +DG LTDS
Sbjct:  660 EEGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDS 705          
BLAST of EY727843 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNPX (Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.776e-14
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1
Query:   13 EEGGLLTEAIRRRPFTLLLLDEIEKAHPDIFNILLQVFEDGHLTDS 150
            EEGG LTEA+RRRP+ +LLLDE+EKAHPD+FN+LLQV +DG LTDS
Sbjct:  693 EEGGQLTEAVRRRPYAVLLLDEVEKAHPDVFNLLLQVLDDGRLTDS 738          
The following BLAST results are available for this feature:
BLAST of EY727843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
ERD1_ARATH5.706e-1884.62ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPB_PSEAE1.922e-1578.72Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_PSEPK3.279e-1574.47Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_THET87.305e-1574.47Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET27.305e-1574.47Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_PSESM1.627e-1474.47Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_XANAC2.125e-1477.78Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_PARUW2.125e-1478.26Chaperone protein clpB OS=Protochlamydia amoebophi... [more]
CLPB_ENTFA2.125e-1478.26Chaperone protein clpB OS=Enterococcus faecalis GN... [more]
CLPB2_SYNPX2.776e-1476.09Chaperone protein clpB 2 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-D03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727843 ID=EY727843; Name=EY727843; organism=Citrus sinensis; type=EST; length=970bp
CCACGCGTCCGTGAAGAGGGAGGTCTTCTTACGGAAGCTATTAGAAGACG
GCCATTTACGTTGTTGTTGCTAGATGAAATAGAGAAAGCACATCCAGATA
TATTTAACATCCTCCTCCAAGTGTTTGAAGATGGCCACCTAACTGATTCT
CATGTTAGTGGATGGTGTTCACACTTGTATCAGAAATTGTAGAAAAATAT
CTTAAAACAAATTTTTTCCTAGTGAATTATTTTGTTCCTTGATTATTATC
AACTGTCAAGTCTCTAACCCTGTATTGGGTTAACAGGGTCGGAGAGTATC
TTTCAAGAATGCATTGATAGTCATGACTTCAAATGTGGGATCTACGACAA
TTGCAAAGGGCAGACATGGCTCTATTGGGTTCTTGCTTGAAGATAATGAA
GTCAACTTCATATGCTGGAATGAAGACACTCGTAGTTGAGGAGCTTAAGG
CATATTTTCGTCCAGAGTTACTTTAAAAGGATAGATGAAGTGGTCGTCTT
TTCGGGTCCCTTGAAAAAGGCTCAGGTTTGTCAACTTCCCTTTGATTTGA
GCATAATCCATGGATTGGCATAAAGTTGTTACCCCTCCACCCCCTTTAAT
TTTTGTTATCCTTGCATTTTAAATGGATTAATTTTTAAGGCTACTGGAGT
TCCCCAAGTTTCCAATTAAACAACCTAATTTGTGAAAAAACTTTGTTTTT
TTTTTGAATGGACCCTTCCCCCTTTCCAAAATGGGGAAAGGGAACAAATG
CCAGTTTTTTTTTCCAAAAACTTGGAAATTTTTGAGATTATAAGCCTCGA
AAAAAAGTGGAAAGAGAAAAGCTAAAATCCCCCAAGGATTTTGAGAAAGG
GAGAGGGTCCAAAATCCAAAAAAAAAATTTTCAATAAACCAAACAAAAGT
TTATAAACCACCAAAATTAAGGAGAACCCACAGCCTCCCTTTTGAGAGAA
AAATTTTATTTATTTTATAT
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