EY727842

Overview
NameEY727842
Unique NameEY727842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727842 vs. ExPASy Swiss-Prot
Match: PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.703e-23
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   82 TTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNNGIYTGTVQHLANAKRFRWIEEILEHHKQYKDISKEGFTARLIALYRKTAMYENARKVYQDMP 399
            T A +   K + S++ G   E N KR+V+KFKK+ +  RFRTN  +Y  TV+ L  AKR  ++EEILE  K+Y+D+SKEGF AR+I+LY K  M+ENA+KV+++MP
Sbjct:   34 TAAISPPQKSLTSLVNG---ERNPKRIVEKFKKACESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMP 136          
BLAST of EY727842 vs. ExPASy Swiss-Prot
Match: PP226_ARATH (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.917e-21
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   58 RLLSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNNGIYTGTVQHLANAKRFRWIEEILEHHKQYKDISKEGFTARLIALYRKTAMYENARKVYQDMP 399
            R  S   +  AT + PK   S+I  +  E + K + +KFKK+     FR N  +Y  TV+ LA AK+F W+EEILE   +Y ++SKEGF AR+I LY +  M+ENA+KV+ +MP
Sbjct:   22 RFFSAVTAAAATPSPPK--PSLITLVNDERDPKFITEKFKKACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMP 133          

HSP 2 Score: 28.4906 bits (62), Expect = 1.917e-21
Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 2
Query:  401 ERNCEQKVLYV*LQSWGRAINSKKLDKVDGVIKKFTPQS*EFEPDL 538
            ERNC++  L          +NSKK D V+G+ K+  P     EPD+
Sbjct:  134 ERNCKRTALSF-NALLNACVNSKKFDLVEGIFKEL-PGKLSIEPDV 177          
BLAST of EY727842 vs. ExPASy Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 44/135 (32.59%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   28 TQNTTMSFPSRLLSCSFSTTATATGPKFIGSVIRGIYKENNLKRLVDKFKKSSDLGRFRTNNGIYTGTVQHLANAKRFRWIEEILEHHKQYKDISKEGFTARLIALYRKTAMYENARKVYQDMP*TEL*AEGSVR 432
            +Q  +  FPS+L +   ST +   G +          K + L + V+KFK+S +   FR  +G+Y+  ++ L  AK+F  I+E+L++ K++ DI  E F  R++ LY  + M E+A K++ +MP  EL  E +V+
Sbjct:   31 SQTKSTKFPSKLKA---STASVGDGGQSSNDAKDS--KNSKLTQKVEKFKRSCESESFRQVHGLYSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMP--ELNCERTVK 158          
The following BLAST results are available for this feature:
BLAST of EY727842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PPR82_ARATH7.703e-2350.00Pentatricopeptide repeat-containing protein At1g55... [more]
PP226_ARATH1.917e-2143.86Pentatricopeptide repeat-containing protein At3g13... [more]
PP225_ARATH7.227e-1332.59Pentatricopeptide repeat-containing protein At3g13... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-D02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727842 ID=EY727842; Name=EY727842; organism=Citrus sinensis; type=EST; length=847bp
ATTTTGTCATCTGAGAGTGACAGTTGGACGCAAAACACAACGATGTCGTT
CCCCTCCCGCCTCCTCAGCTGCTCTTTCTCCACTACTGCGACCGCGACCG
GCCCCAAGTTTATCGGCTCCGTCATCCGCGGCATTTACAAAGAAAATAAT
CTCAAACGACTTGTCGACAAGTTCAAGAAGTCCTCCGACCTCGGACGGTT
CCGCACCAATAACGGCATTTACACGGGCACTGTTCAACATCTCGCCAATG
CTAAACGCTTCAGATGGATCGAAGAGATCCTCGAACACCATAAGCAGTAC
AAAGACATATCCAAAGAAGGTTTCACCGCCCGGCTTATCGCTCTTTACAG
AAAAACCGCCATGTATGAAAATGCCCGTAAAGTGTACCAAGATATGCCTT
GAACGGAACTGTGAGCAGAAGGTTCTGTACGTTTAATTGCAATCCTGGGG
ACGAGCAATTAACTCAAAGAAATTAGATAAAGTTGATGGAGTGATTAAAA
AATTTACACCACAAAGTTAAGAATTTGAACCGGATTTGGTATTCCTAAGA
TAACAATTATAAGAGATTATGTGATAAAGGATCAAAGGAAACAAACAAAA
CATAATAAGAAAATAATAAAAAAGAAAGAATATAGAACAGAATAGAAACG
GTAAAACAGACATTAAAGGAGTGTAAACGAAGGGAGAAATGAGAAAAGGT
AAGAAAATTGGGGATAAAAGAGAAAAATATGGAGAGAGAATGATGGAACA
TAAAAAGAGTAAGTTGAAGGGTGGAAATTTGACAAACAACAGAAATAGTA
TAAGCCAGCGGACAAAAAAATAAAAGTATAGATAGAGAACCAGACTA
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