EY727821

Overview
NameEY727821
Unique NameEY727821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1034
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727821 vs. ExPASy Swiss-Prot
Match: DSCR3_MOUSE (Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.345e-21
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   94 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQVRICQGKNRHLM 483
            +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+HG  +NIQ  +     R L+
Sbjct:    3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYTLRCDMRRSLL 129          
BLAST of EY727821 vs. ExPASy Swiss-Prot
Match: DSCR3_PONAB (Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.698e-20
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   94 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQVRICQGKNRHLM 483
            + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQ  +     R L+
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYTLRCDMKRSLL 129          
BLAST of EY727821 vs. ExPASy Swiss-Prot
Match: DSCR3_HUMAN (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.698e-20
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   94 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQVRICQGKNRHLM 483
            + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQ  +     R L+
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYTLRCDMKRSLL 129          
BLAST of EY727821 vs. ExPASy Swiss-Prot
Match: DSCR3_DICDI (Down syndrome critical region protein 3 homolog OS=Dictyostelium discoideum GN=DDB_G0292212 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.322e-14
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   94 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRT-SGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQVRI 456
            + +++KL + ++IYRP   + G +VI S   + H G+ + V G+  LQ+   S G+ E+ Y  +KPI ++  +  +    G+  +G TE+PF   L+    + L   Y+T+HG  +NIQ  I
Sbjct:    3 NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAFYNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQYSI 121          
The following BLAST results are available for this feature:
BLAST of EY727821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DSCR3_MOUSE3.345e-2140.00Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_PONAB3.698e-2038.46Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_HUMAN3.698e-2038.46Down syndrome critical region protein 3 OS=Homo sa... [more]
DSCR3_DICDI2.322e-1431.97Down syndrome critical region protein 3 homolog OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-106-B02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727821 ID=EY727821; Name=EY727821; organism=Citrus sinensis; type=EST; length=1034bp
CACGCGTCCGGCGGCAATCCCCCTTCTTCGGGTTCACGGACGTTTGTCCT
CCTTCGCGCGTTTGTCCTGAAGCTCAAGCTCCAGATCGACATGTCGACTG
TAGAGATCAAACTTTCCCGATCAAACCGCATATATCGGCCTTCTGAACCT
CTTCAAGGTAAAATCGTAATCAAGTCTTCTTCTTCCATTTTTCACTATGG
AATTCACCTCACCGTTAACGGATCCGCCAATTTGCAGGTTCGAGGAGGAT
CAGCTGGTGTTGTTGAGTCTTTGTACGGTGTTATCAAGCCTATTAAAATT
CTAAAGAAGAGCCAAGAGATCAGAACTTCTGGAAGGATTGGTTCAGGTAC
AACTGAGGTACCATTTTCCATGAACCTTAAGCAGCATGGAGAAGAAAATT
TAGAAAGATTTTATGAGACCTTTCATGGAGCAGATATCAACATCCAGGTG
AGGATATGTCAAGGGAAAAATCGTCATTTGATGACCCTTTGAAATTAGCT
TGTTGTTGGCCGCACTGCTTTCCATAATCTTAAGCCCTTATAAAATTTTT
ATCAATCTTTTTGAATGAATTAAACAAATCCCGGAAAAAGAATTTGGTAA
ACTGTAAAATTTAAAGAAAAGGAATAACTTAAAAATAAATTCCACCTGGG
TCACCTAAAGGGGGAAATTCCTTTGGTTAAAAACGGAAAAAAACCTGAAT
TTCTTTTGACCAACAATTTTTTCCCCTGGGAAAGGGTTTGGTCTTTTTAA
ATTTAATTCCGGGGAAAAATTCCAAAAAAACATCCCTTTTATTTTCCCGG
AAAATTAAAAAATGGGGGTATACTTGGGGTTTTCCCCCCCCCCTTGGGGA
ATTTAATTTTTAATTTTGGGGGGGGATTCTTAAAATTTTTTAAACAAATT
AAAAAATTTTGGGGAAAGAGGGGTCCCCCCTGGAAACACATAAAAGAATG
GGGGGGTGGGGGTAAGACTTAATATATAATATTCTCTTTTTTTTTAAAAG
AAAAAAAAAATTTTTTTATATAAATAAAAAAAGA
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