EY754052

Overview
NameEY754052
Unique NameEY754052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY754052 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.984e-20
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   87 LLTMKDLSFYVGVIGSIISVLMFLAPVRTFWRIIKHRSTEEFQSLPYICTLLNSSLWPYYGI 272
            ++  K + F +GVIG++IS  +F AP +TFWRI K +S EEF  +PY+ T++N  LW +YG+
Sbjct:    1 MVDAKQVRFIIGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGL 62

HSP 2 Score: 46.2098 bits (108), Expect = 5.984e-20
Identity = 36/134 (26.87%), Postives = 60/134 (44.78%), Query Frame = 2 
Query:  311 GFGILVEAVYVTLFFIYAPTKAMRAKTAIIFGILDVGFLDH*HXCXXXX-EGE-ARIDAIGFMCAGLNIIMYASPLSAMKTVVTTKSVEXXXXXXXXXXXXNGGIWAFYALLVR-DIFLWCTKWNGIFAGNSSV 703
            G G+++E  YV ++ +Y   K    +  + F  L+V  +           +G+  +   +G +C   NI MY +P  A+  VV TKSVE            N GIW  Y+L+ + D ++  +   G F   S +
Sbjct:   77 GVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQL 210
The following BLAST results are available for this feature:
BLAST of EY754052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPG1_ARATH5.984e-2046.77Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-010-B04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY754052 ID=EY754052; Name=EY754052; organism=Citrus sinensis; type=EST; length=872bp
AATTCAGGGCTTGACCCACGCGTCCGATTTTCAGTAAGCTTTCTTGATAT
ACAAATTAATCCAAAGACCATTTTTTCTTTTCTCTTCTTCTAACCATGAA
GGATTTGAGTTTTTATGTTGGAGTAATAGGCAGCATAATCTCAGTGCTCA
TGTTTCTTGCTCCAGTTAGAACATTTTGGAGAATCATAAAGCATCGATCG
ACTGAGGAATTTCAGAGCCTCCCCTATATCTGCACTTTGTTAAATTCATC
TCTGTGGCCTTATTACGGAATCACAACACCTGAATTTTTCTTGTCCCTGA
AATAAGGNNGGGCTTTGGCATTTTAGTTGAAGCTGTTTATGTAACCTTAT
TTTTCATATATGCTCCAACAAAAGCAATGAGGGCTAAAACTGCGATTATT
TTCGGCATACTGGATGTGGGATTTTTAGACCATTGACACTGNTGCTTNNN
NNNNNTAGAAGGAGAAGCTCGCATTGATGCCATAGGGTTTATGTGTGCCG
GCCTCAATATTATTATGTATGCATCGCCTCTATCCGCCATGAAAACAGTG
GTGACAACAAAGAGTGTGGAGTTCATGCCATTCATGCTCTCATTCTTCTT
TTTCTTGAACGGTGGAATCTGGGCTTTCTATGCTTTGCTTGTTCGTGATA
TTTTCCTTTGGTGTACCAAATGGAACGGGATTTTTGCTGGGAACAGCTCA
GTTGGTGCTCTTATGCATCTACAGAAATGGCAAGCCTTCAAAAATGCCTC
GACTTCATGGGAGAAAGGACCCAACCCCAACCGCTAATATTCTCTTGGAG
GCCAAGATAAACCTCTAAAACTTAGGCGGGCCGCCTTATTTTTTTCAAAT
TTATACTCCCTTACGCCACGAT
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