GE213226

Overview
NameGE213226
Unique NameGE213226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2999 contig Csv1_Contig2999:57..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: SYP22_ARATH (Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.899e-24
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   22 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            VLLDNEI FNEA+IEEREQGI+EI +QI EVNEIFKDL VLV++QGVMIDDI ++I++S A+T+Q  +QL +A+K QK
Sbjct:  165 VLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQK 242          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: SYP21_ARATH (Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.650e-24
Identity = 52/78 (66.67%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   22 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            V LDNEITFNEAIIEEREQGI+EI++QI +VN +FKDL ++V+ QG ++DDISSN+++SHA+T QAT QL KA+K Q+
Sbjct:  176 VFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQR 253          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: SYP23_ARATH (Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.766e-22
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   22 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 237
            VLLDNEI FNEA+IEEREQGI+EIQ+QI EV+EIFKDL VLVH+QG MIDDI ++I++S+A+TAQ  + L +
Sbjct:  174 VLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQGKSHLVR 245          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.485e-15
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   22 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 252
            VLLDNEI+ NEA IE REQGI+E++ QISEV E+FKDL V+V  QG  IDDI   I++  ++ AQ  + L KAS  Q
Sbjct:  255 VLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKIDNLRSAAAQGKSHLVKASNTQ 330          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: STX7_MOUSE (Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.177e-12
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   31 DNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG MID I +N+ES+     QA  QL++A+  Q+
Sbjct:  157 DEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESAEVHVQQANQQLSRAADYQR 232          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: STX7_RAT (Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   31 DNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+ES+     QA  QL++A+  Q+
Sbjct:  157 DEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQR 232          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: STX7_BOVIN (Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.621e-12
Identity = 33/78 (42.31%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   25 LLDNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            L D EIT ++  +I+ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E++     QA  QL++A+  Q+
Sbjct:  155 LQDEEITEDDLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQR 232          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: STX12_PONAB (Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12
Identity = 33/78 (42.31%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   31 DNEITFNEA---IIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            D+E+   E    +I+ERE  I++++  I +VN+IFKDL +++H+QG +ID I +N+ESS     +AT QL +A+  QK
Sbjct:  168 DDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQK 245          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: STX7_PONAB (Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 32/76 (42.11%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   31 DNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E++     QA  QL++A+  Q+
Sbjct:  157 DEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQR 232          
BLAST of GE213226 vs. ExPASy Swiss-Prot
Match: STX7_HUMAN (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 32/76 (42.11%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   31 DNEITFNEA-IIEEREQGIKEIQEQISEVNEIFKDLPVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 255
            D EIT ++  +I ERE  I++++  I ++NEIFKDL +++HEQG +ID I +N+E++     QA  QL++A+  Q+
Sbjct:  157 DEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQR 232          
The following BLAST results are available for this feature:
BLAST of GE213226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SYP22_ARATH3.899e-2469.23Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 ... [more]
SYP21_ARATH6.650e-2466.67Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 ... [more]
SYP23_ARATH4.766e-2269.44Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 ... [more]
SYP24_ARATH1.485e-1557.14Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
STX7_MOUSE1.177e-1244.74Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3[more]
STX7_RAT2.621e-1243.42Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4[more]
STX7_BOVIN2.621e-1242.31Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1[more]
STX12_PONAB5.839e-1242.31Syntaxin-12 OS=Pongo abelii GN=STX12 PE=2 SV=1[more]
STX7_PONAB7.626e-1242.11Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3[more]
STX7_HUMAN7.626e-1242.11Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4[more]

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Properties
Property NameValue
Genbank description73 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213226 ID=GE213226; Name=GE213226; organism=Citrus sinensis; type=EST; length=439bp
ATTAGCGTGGTCGCGGCCGAGGTACTGCTGGACAATGAGATCACATTCAA
CGAGGCCATTATTGAAGAAAGAGAGCAGGGGATCAAAGAAATTCAGGAAC
AAATTAGTGAGGTAAATGAGATTTTCAAAGATTTACCCGTGTTGGTTCAT
GAGCAAGGAGTAATGATTGATGACATTAGCTCTAACATTGAGAGCTCCCA
TGCTTCGACTGCACAAGCTACCACCCAACTTGCGAAGGCATCTAAAATAC
AGAAATCTAGTTCATCTCTGAGTTGTTTGCTATTGGTGATTTTTGGAATC
ATTTTGCTTATTGTCATCATTCTCATTGTGGCTTGAGGCCGATCAAGGCG
TGGCCTCCTTCAGTGTTTCTGTGGTCGGATCACGGATGTATAATGTCCTT
GTCGAACTATATTGTACCTGCCCGGGCGGCCGCTCGAAA
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