EY727691

Overview
NameEY727691
Unique NameEY727691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1063
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.164e-47
Identity = 93/99 (93.94%), Postives = 98/99 (98.99%), Query Frame = 3
Query:  162 MEPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 458
            M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINLVSSESN+VC++EDKRTIAPEHVLKAL+VLGFGEYIEEVYAAYEQHK
Sbjct:    1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.045e-25
Identity = 51/89 (57.30%), Postives = 74/89 (83.15%), Query Frame = 3
Query:  192 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 458
            +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C RE KRTIA EHV+KAL  LGF +Y ++V   Y++HK
Sbjct:    8 EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHK 96          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe GN=ncb2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.854e-23
Identity = 50/92 (54.35%), Postives = 70/92 (76.09%), Query Frame = 3
Query:  183 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 458
            G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C +E K+TIA EH++KALE L F EYI E      +HK
Sbjct:    4 GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHK 95          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.146e-22
Identity = 47/89 (52.81%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  195 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKS 461
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K+
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKT 96          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.146e-22
Identity = 47/89 (52.81%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  195 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKS 461
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K+
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKT 96          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.146e-22
Identity = 47/89 (52.81%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  195 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKS 461
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K+
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKT 96          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.146e-22
Identity = 47/89 (52.81%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  195 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKS 461
            +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K+
Sbjct:    9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKT 96          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NC2B_DROME (Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.701e-18
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  195 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 458
            ++ +LP+A++ KIIKE++P  VRVA ++++L++ CC EFI+L+SSE+NEVC+  +K+TI  EHVL+ALE LGF +Y +E  A     K
Sbjct:   16 DELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCK 102          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NCB2_YEAST (Negative cofactor 2 complex subunit beta OS=Saccharomyces cerevisiae GN=NCB2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.565e-13
Identity = 36/77 (46.75%), Postives = 57/77 (74.03%), Query Frame = 3
Query:  195 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYI 425
            ++ SLPKAT+ K+I E+L  D+   +DA++++I   +EFI ++SS ++E+   E K+TIAPEHV+KALE L + E+I
Sbjct:    6 DNVSLPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHVIKALEELEYNEFI 82          
BLAST of EY727691 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.951e-12
Identity = 32/92 (34.78%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  183 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 458
            G  ++D  LP A +++I+K+ +PA+ ++A+DA++ + EC  EFI+ ++SE+++ C RE ++TI  + +L A+  LGF +YIE +    ++++
Sbjct:   35 GVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYR 126          
The following BLAST results are available for this feature:
BLAST of EY727691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NC2B_ARATH2.164e-4793.94Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI1.045e-2557.30Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_SCHPO4.854e-2354.35Negative cofactor 2 complex subunit beta OS=Schizo... [more]
NC2B_RAT3.146e-2252.81Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE3.146e-2252.81Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN3.146e-2252.81Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK3.146e-2252.81Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_DROME4.701e-1850.00Protein Dr1 OS=Drosophila melanogaster GN=NC2beta ... [more]
NCB2_YEAST1.565e-1346.75Negative cofactor 2 complex subunit beta OS=Saccha... [more]
NFYB3_ORYSJ2.951e-1234.78Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-104-D06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727691 ID=EY727691; Name=EY727691; organism=Citrus sinensis; type=EST; length=1063bp
ATTTTTTTGGGAACCGTCGGTCGGGTCGGGATTTCCGGGTCGACCCCGCG
TCCGACTGAATCGTCCCTCGACTCGGATCTTAACTCGACTGACTCGTTTT
CTGCATCCTTAGTTGATTCTCTCGTTTCTCTGTTCGACTCGGTTCGGTGA
CTCGATTAAAGATGGAGCCGATGGATATTGTTGGAAAGTCAAAGGAGGAC
GCATCGCTCCCAAAAGCTACAATGACTAAAATTATAAAAGAGATGTTGCC
AGCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTTTTGATTGAGTGTT
GTGTAGAGTTTATAAATCTTGTTTCCTCTGAGTCCAATGAAGTTTGCAGC
AGGGAGGATAAAAGAACAATTGCTCCCGAGCATGTACTCAAGGCTTTGGA
GGTTCTTGGGTTTGGTGAGTACATCGAGGAGGTCTATGCTGCATACGAGC
AACACAAGTCTTGAGACTATGGACTCGTTGAAAGGTGGCAAATGGAGCAA
TGGGGCCGAGATGACGGAGGAAGAAGCAGCGGCTGAGCAGCAAAAAATGT
TTGCCGAGGCACGTGGCACGAATGAACGGGTGAAGCCGCTGGCCCTCCCC
AGCAACCGGAAATTAACCCAAGTTTTAAAAAGAGCTTAATTAACTATTAG
GGATTTTTAATTTTTCCTCCGCCCCTAAGGCAAACATCCCTTGGAAATCT
TTTCGGTTCTGGCCTTTTTAGTCCCCCTTAAATTTATGTAAAAAAAAGCC
TTTTGGGAAGGGGAAATAACCCCATTGGGGGGAAAAGGCCCTTCTCCCTT
TTTGATACTTTTTACTTTAGGGGATTAATTGGGTCTTTAAAATTTAAAGG
TAAATTTTAGGGGGGCGTTTTGGTTTCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAGGGGGGGGGGCCCCCTTCTAAAAAGGGTATCT
CACAATATTTTATACATATCCCGGGGGGGGGGGGGGAAAGCGCACAAATA
ATCTCTTTTTTCTTATAAAATGGGGGGACCCCCACAAAAAAAATATTTTA
TTATTCATTTCAC
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