GE213221

Overview
NameGE213221
Unique NameGE213221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length289
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1327..1615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.288e-20
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = -3
Query:  111 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEH 269
            VRV QSDGPHSFAVTRA+PGPSCGDVLRVMQH+PELMFETLKHRA+EY   ++
Sbjct:  594 VRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDN 646          
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.315e-19
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = -3
Query:  117 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQ 269
            VRVLQSDGPH FAVTRA+ G SC DVLRVMQHEP+LMFETLKHRA E+CGQ
Sbjct:  607 VRVLQSDGPHGFAVTRAVAGSSCADVLRVMQHEPQLMFETLKHRALEFCGQ 657          
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.005e-16
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  129 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 269
            VRV QSDGPHSFAVTRA+PG S  DVLR MQHEPELMF+TLKHRAEE
Sbjct:  594 VRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHRAEE 640          
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.833e-16
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = -3
Query:  129 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 269
            VRV QSDGP S+AVTRA+PGPS  DVLRVM HEPELMF+TLKHRAEE
Sbjct:  603 VRVQQSDGPQSYAVTRAVPGPSSSDVLRVMHHEPELMFQTLKHRAEE 649          
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.299e-15
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = -3
Query:  129 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 269
            VRVLQ DGPH FAVTRAM G S  DVLR MQHEPELMF+TLKHRAEE
Sbjct:  583 VRVLQKDGPHGFAVTRAMMGQSSADVLRAMQHEPELMFQTLKHRAEE 629          
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.299e-15
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = -3
Query:  129 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 269
            VRVLQSDGPH FAVTRA+ G S  DVLR MQHEPELMF+TLKHRAEE
Sbjct:  582 VRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHRAEE 628          
BLAST of GE213221 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = -3
Query:  132 VRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAE 269
            VRV QSDGPH FAVTRA  GPSC DVLR MQHEPE+MFE LK R +
Sbjct:  596 VRVSQSDGPHCFAVTRAAAGPSCADVLRSMQHEPEVMFEVLKQRTD 641          
The following BLAST results are available for this feature:
BLAST of GE213221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPE1_SOYBN2.288e-2083.02Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE1_PEA4.315e-1984.31Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE2_ARATH2.005e-1685.11Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_DIACA5.833e-1682.98Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_BRAJU1.299e-1582.98Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ARATH1.299e-1582.98Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE1_ORYSJ1.216e-1376.09Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
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Properties
Property NameValue
Genbank description66 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213221 ID=GE213221; Name=GE213221; organism=Citrus sinensis; type=EST; length=289bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTGAGCAAGGCTGCTAGCTAAAGC
AGAATTATTAGCCATGCCGTGATCGTAATCATCAGTATCACCATCCCCAC
CATTACTACCATGCTCCTGTCCACAATATTCCTCAGCACGGTGTTTGAGG
GTCTCAAACATGAGCTCGGGCTCGTGCTGCATCACCCGGAGGACATCCCC
ACAAGACGGCCCAGGCATGGCCCGAGTCACAGCAAAGCTGTGCGGACCAT
CACTCTGCAAGACGCGTACCTCGGCCGCGACCACGCTAA
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