GE213220

Overview
NameGE213220
Unique NameGE213220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:606..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.650e-21
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            VTVFGVRNPEEIPW ETGAE+VVESTGVFT              KVIISAPSKDAPMFVVGVNEHEY
Sbjct:   78 VTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEY 144          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.062e-20
Identity = 49/69 (71.01%), Postives = 51/69 (73.91%), Query Frame = -3
Query:   18 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEYLP 224
            VTVFG RNPEEIPW ETG EYVVESTGVFT              KV+I+APSKDAPMFVVGVNEHEY P
Sbjct:   79 VTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKP 147          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.387e-20
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            VTVFG+RNPE+IPWAE GA+YVVESTGVFT              KV+ISAPSKDAPMFVVGVNEHEY
Sbjct:   78 VTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEY 144          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 50/69 (72.46%), Postives = 51/69 (73.91%), Query Frame = -3
Query:   18 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEYLP 224
            VTVFG RNPEEIPW  TGA+YVVESTGVFT              KVIISAPSKDAPMFVVGVNEHEY P
Sbjct:   76 VTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKP 144          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            VTVFG RNPEEIPW +TGA+YVVESTGVFT              KVIISAPSKDAPMFVVGVNEHEY
Sbjct:   76 VTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEY 142          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.036e-20
Identity = 50/69 (72.46%), Postives = 51/69 (73.91%), Query Frame = -3
Query:   18 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEYLP 224
            V VFG+RNPEEIPWAETGAEYVVESTGVFT              KVIISAPSKDAPMFVVGVNE  Y P
Sbjct:   76 VAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTP 144          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.991e-20
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            V VFG RNPEEIPW E GAEYVVESTGVFT              KV+ISAPSKDAPMFVVGVNEHEY
Sbjct:   79 VAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEY 145          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.174e-19
Identity = 46/67 (68.66%), Postives = 51/67 (76.12%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            VTVFG+RNPE+IPW E GA++VVESTGVFT              KV+ISAPSKDAPMFVVGVNEHEY
Sbjct:   78 VTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEY 144          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.534e-19
Identity = 48/67 (71.64%), Postives = 50/67 (74.63%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            VTVFG+RNPEEIPW E GA+YVVESTGVFT              KVIISAPSKDAPMFVVGVNE EY
Sbjct:   76 VTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEY 142          
BLAST of GE213220 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.003e-19
Identity = 47/67 (70.15%), Postives = 49/67 (73.13%), Query Frame = -3
Query:   24 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXKVIISAPSKDAPMFVVGVNEHEY 224
            V VFG RNPEEIPW E GAEYVVESTGVFT              KV+ISAPSKDAPMFVVGVNEH+Y
Sbjct:   79 VAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQY 145          
The following BLAST results are available for this feature:
BLAST of GE213220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
G3PC_MAGLI3.650e-2176.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI1.062e-2071.01Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.387e-2071.64Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA3.090e-2072.46Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU4.036e-2073.13Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_CRAPL4.036e-2072.46Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA8.991e-2071.64Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.174e-1968.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY1.534e-1971.64Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY2.003e-1970.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank description64 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213220 ID=GE213220; Name=GE213220; organism=Citrus sinensis; type=EST; length=226bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCGTGCTCATTGACACCCACAAC
AAACATAGGAGCATCCTTGCTGGGGGCTGAGATGATAACTTTCTTAGCAC
CACCCTTCAAATGGGCAGCAGCCTTATCCTTGTCTGTAAAGACTCCAGTC
GACTCCACAACATACTCGGCTCCAGTCTCAGCCCATGGGATCTCCTCTGG
GTTCCTAACACCGAAAACAGTGACAG
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