GE213219

Overview
NameGE213219
Unique NameGE213219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2795 contig Csv1_Contig2795:1021..1376. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213219 vs. ExPASy Swiss-Prot
Match: CNGT2_ARATH (Cytokinin-N-glucosyltransferase 2 OS=Arabidopsis thaliana GN=UGT76C2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.277e-14
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 2 
Query:   44 YAALPVLSQKGYFPIQDSHDLEAPVPELPPLRMKDIPVIETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFHKY 334
            Y +LP++  KGY P+ +S + E  VPE PPL+ +D+  +   + E L  F    +     SSG I+ S +ELE+DSL   +  F +P F IGPFH Y
Sbjct:  143 YPSLPLIRTKGYLPVSES-EAEDSVPEFPPLQKRDLSKVFGEFGEKLDPFLHAVVETTIRSSGLIYMSCEELEKDSLTLSNEIFKVPVFAIGPFHSY 238
[Close]
BLAST of GE213219 vs. ExPASy Swiss-Prot
Match: CNGT1_ARATH (Cytokinin-N-glucosyltransferase 1 OS=Arabidopsis thaliana GN=UGT76C1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.919e-12
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 2 
Query:   53 LPVLSQKGYFPIQDSHDLEAPVPELPPLRMKDIPVI--ETLYQETLHQFAAEAINQMKASSGCIWNSVQELEQDSLAKFHREFPIPSFPIGPFH 328
            +P + ++G+ P+ DS + +  VPE PPLR KD+  I   +   + L  +  + ++  K +SG I  S +EL+ DSLA+ ++ F IP FPIGPFH
Sbjct:  150 VPQIRREGFLPVPDS-EADDLVPEFPPLRKKDLSRIMGTSAQSKPLDAYLLKILDATKPASGIIVMSCKELDHDSLAESNKVFSIPIFPIGPFH 242
The following BLAST results are available for this feature:
BLAST of GE213219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CNGT2_ARATH4.277e-1440.21Cytokinin-N-glucosyltransferase 2 OS=Arabidopsis t... [more]
CNGT1_ARATH8.919e-1239.36Cytokinin-N-glucosyltransferase 1 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank description61 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213219 ID=GE213219; Name=GE213219; organism=Citrus sinensis; type=EST; length=356bp
ATTAGCGTGGTCGCGGCCGAGGTGTGTCTCTTCCTCTCTTGTTTATGCTG
CCTTACCAGTTCTAAGCCAAAAGGGTTACTTTCCCATACAAGATTCTCAT
GATTTGGAAGCCCCAGTGCCAGAGCTTCCGCCTCTAAGAATGAAAGACAT
TCCTGTCATTGAAACGCTTTATCAAGAGACACTGCATCAATTTGCAGCAG
AAGCAATCAATCAGATGAAGGCTTCCTCAGGATGCATATGGAATTCAGTT
CAGGAACTTGAACAAGATTCTCTTGCTAAATTTCACCGGGAGTTCCCCAT
TCCATCGTTCCCTATAGGCCCGTTTCACAAGTACCTGCCCGGGCGGCCGC
TCGAAA
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