GE213209

Overview
NameGE213209
Unique NameGE213209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8025 contig Csv1_Contig8025:309..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.246e-42
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 3
Query:    9 RPGRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R  RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIR RHIRVGRQLVNIPSF+VRV+S KH++FSLTSPFGGGRP RVK RN
Sbjct:   81 RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.817e-41
Identity = 83/98 (84.69%), Postives = 91/98 (92.86%), Query Frame = 3
Query:    9 RPGRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R  RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIR RHIRVG+QLVNIPSF+VR+DS KHI+F+LTSPFGGGRP RVK RN
Sbjct:   81 RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.395e-35
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVK 293
            R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIR RHIRVG+Q+VN+PSFVVR+DS KHI+F+LTSPFGGGRP RV+
Sbjct:   80 RVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVR 171          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.810e-34
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRNI 305
            R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIR RHIRV +Q+VNIPSFVVR+DS KHI+FSL SPFGGGRP RVK +N+
Sbjct:   84 RIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 140.584 bits (353), Expect = 5.300e-33
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIR RHIRV +Q+VNIPSF+VR+DS KHI+FSL SP+GGGRP RVK +N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.300e-33
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIR RHIRV +Q+VNIPSF+VR+DS KHI+FSL SP+GGGRP RVK +N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 5.300e-33
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIR RHIRV +Q+VNIPSF+VR+DS KHI+FSL SP+GGGRP RVK +N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 5.300e-33
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIR RHIRV +Q+VNIPSF+VR+DS KHI+FSL SP+GGGRP RVK +N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.300e-33
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRN 302
            R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIR RHIRV +Q+VNIPSF+VR+DS KHI+FSL SP+GGGRP RVK +N
Sbjct:   83 RIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177          
BLAST of GE213209 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 9.040e-33
Identity = 67/96 (69.79%), Postives = 83/96 (86.46%), Query Frame = 3
Query:   18 RYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRLRHIRVGRQLVNIPSFVVRVDSHKHIEFSLTSPFGGGRPVRVKIRNI 305
            R G L+ES+ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI  RHIRVG+Q+VN+PSFVVR+D+ KHI+F+L+SP+GGGRP R K + +
Sbjct:   82 RLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177          
The following BLAST results are available for this feature:
BLAST of GE213209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS92_ARATH6.246e-4285.7140S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH1.817e-4184.6940S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN7.395e-3577.1740S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME2.810e-3475.0040S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT5.300e-3371.5840S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN5.300e-3371.5840S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE5.300e-3371.5840S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN5.300e-3371.5840S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN5.300e-3371.5840S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO9.040e-3369.7940S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank description51 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213209 ID=GE213209; Name=GE213209; organism=Citrus sinensis; type=EST; length=572bp
ATTCGAGCCGCCCGGGCAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAG
CTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCT
CCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTC
GAGTGCTCATCAGGCTCAGGCACATTAGGGTTGGAAGGCAACTTGTCAAC
ATTCCCTCATTTGTAGTGAGGGTTGATTCCCATAAGCACATTGAATTCTC
ACTCACAAGTCCATTCGGAGGTGGGCGCCCTGTAAGAGTGAAAATAAGGA
ACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGGGATGAAGAG
GATGAAGAATAAATTACCTGTGTGAACAGATAGTTTTTTTATGGTTACAG
TAGGAATTCTGGCTGAACTTTGCAAGTGGACTTATCTTCTCTAAGTTTTA
TGTTTTTATTTGCGAATTTTCTTGCTATAATAGGAGGTTTTGCTTGCTTT
GTGTTTTACAGACTACTCATTGAGAGAGTTGTTTTTGTTTTTTGGGATGT
ACCTCGGCCGCGACCACGCTAA
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