EY753939

Overview
NameEY753939
Unique NameEY753939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753939 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.212e-60
Identity = 130/279 (46.59%), Postives = 171/279 (61.29%), Query Frame = 3
Query:    3 VPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKG-LHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDRYLGCFVEYEVKVFSLKNRSWTRVKXXAHYLRFMVQFYFHLLHKRSYGCVC----QWGLTLGCLLVGXKLEMGILNGGFDLGLEEFRLL--PQPIMALERKIWVGRGCPGGIMGLKC 818
            +P+D+V     +LP KTL+R R LS+P   +I+DPDFI+  L+  + T  HL ++L+G L LYSV+LDSLD      H P      TEVFGS NGL+ LSNS  D+A+FNP+TRQ+ +LP   IDLPD S  RG+VFYG G+D VSDDYKVVRMVQFK D +  LGC   YEVKVFSLK  SW R++  A  ++ +  FY+HLL++R YG +      W L     L+   L +      FDL LEEF ++  P+ +      I +  G   G + L C
Sbjct:    4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVSDVEH-PMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIV-----RFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMC 276          
BLAST of EY753939 vs. ExPASy Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 1.115e-40
Identity = 92/212 (43.40%), Postives = 129/212 (60.85%), Query Frame = 3
Query:    6 PLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLY-SVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFK-KDEDRYLGCFVEYEVKVFSLKNRSWTRVKXXAHYLRFMVQFYFHLLHKRSYGCV 635
            P D++     +L   TL++ R LS+P  S+ID P+F+   L   + T  HL ++L+G  L  +VELDS +      H P      TEVFGS NG++ L NS  D+A+FNP+TR++ +LP+E ID P++   R +VFYG G+D V DD+KVVR+VQ K K+  +   C V  EVKVFSLK  SW RV     +    + +Y+HLL +R YG V
Sbjct:    5 PTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRLLRTVELDSPENVSDIPH-PLQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPV--EVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVV 213          
BLAST of EY753939 vs. ExPASy Swiss-Prot
Match: FBK67_ARATH (F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.543e-12
Identity = 57/194 (29.38%), Postives = 93/194 (47.94%), Query Frame = 3
Query:    3 VPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFI---KLQLNNSIATKSHLR----LILKGLHLYSVELDSLDKAIPF---NHYPESIWTGT-EVFGSCNGLLALS-NSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDRYLGCFVEYEVKVFSLKNRSW 548
            +PL+++   L +LPVK+L R++C+     S+I +  F     L L  S AT S       +     HL S  + SL  A       H  E +     +V G+C+GL+    + D+ + L+NP  +   +L    ++  D  C+   V YGFG+D   DDYKVV ++Q +          V+ E K++S + + W
Sbjct:   14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECV---VTYGFGYDESEDDYKVVALLQQRHQ--------VKIETKIYSTRQKLW 196          

HSP 2 Score: 24.2534 bits (51), Expect = 7.543e-12
Identity = 12/39 (30.77%), Postives = 19/39 (48.72%), Query Frame = 1
Query:  583 LWFNFTS-----IFCIKEAMXVYVNGG*HWGVSS*AXSW 684
            LW + TS     +   K    +Y+NG  +W  +S + SW
Sbjct:  195 LWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSW 233          
The following BLAST results are available for this feature:
BLAST of EY753939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FB233_ARATH8.212e-6046.59F-box protein At4g12560 OS=Arabidopsis thaliana GN... [more]
FB244_ARATH1.115e-4043.40F-box protein At4g22390 OS=Arabidopsis thaliana GN... [more]
FBK67_ARATH7.543e-1229.38F-box/kelch-repeat protein At3g23880 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-F08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753939 ID=EY753939; Name=EY753939; organism=Citrus sinensis; type=EST; length=870bp
AAGTACCCCTAGATGTTGTTACCGGTACTCTGTATCAATTACCGGTGAAA
ACTCTGTTGCGCTACCGCTGTCTATCAAGACCGCTATGTTCAATAATCGA
CGATCCAGATTTCATCAAGCTTCAATTGAACAACTCAATTGCAACCAAAT
CCCACCTCCGTTTGATTCTCAAAGGTTTGCATCTTTATTCCGTTGAGCTT
GATTCACTCGATAAAGCTATCCCTTTTAACCACTACCCAGAAAGCATTTG
GACTGGTACTGAAGTTTTTGGTTCATGCAACGGCTTGCTTGCTTTATCTA
ATTCTGATCAAGATATCGCTCTGTTTAATCCCGCTACTAGACAGCTGTTT
AAGTTACCCGTTGAATATATTGATTTGCCCGACAAATCTTGTATTCGCGG
TTTCGTCTTTTATGGTTTTGGTCATGATCTTGTTAGTGATGATTATAAAG
TTGTGAGGATGGTTCAGTTTAAGAAAGATGAAGACCGATATCTTGGTTGC
TTCGTCGAGTATGAAGTCAAGGTTTTTAGTTTAAAAAATAGATCTTGGAC
GAGGGTTAAGAANNATGCCCACTATCTTCGCTTTATGGTTCAATTTTACT
TCCATCTTTTGCATAAAAGAAGCTATGGNTGTGTATGTCAATGGGGGTTG
ACATTGGGGTGTCTCCTCGTAGGCCANAAGTTGGAAATGGGTATTTTGAA
TGGGGGCTTTGATCTGGGCCTNGAAGAGTTTCGTCTATTGCCACAGCCAA
TTATGGCGCTCGAGAGAAAAATTTGGGTTGGACGTGGGTGCCCTGGAGGA
ATTATGGGTTTGAAGTGCATTTTGATTTANGGAAGCCATGGGGGGATAAT
GAAAAATTGGGTTGAAGGAT
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