EY753936

Overview
NameEY753936
Unique NameEY753936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753936 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 1.609e-116
Identity = 209/246 (84.96%), Postives = 218/246 (88.62%), Query Frame = 2
Query:   65 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRV*RFPHIYGPFGTWKGGRXKL-LLFLPKGSYLTDKLK-WGRWT*TRLY 787
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRV RF +IYGPFGTWKGGR K    F  K    TD+ + WG    TR +
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSF 246          
BLAST of EY753936 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 7.986e-116
Identity = 208/246 (84.55%), Postives = 217/246 (88.21%), Query Frame = 2
Query:   65 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRV*RFPHIYGPFGTWKGGRXKL-LLFLPKGSYLTDKLK-WGRWT*TRLY 787
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRV RF +IYGPFGTWKGGR K    F  K    TD+ + WG    TR +
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSF 246          
BLAST of EY753936 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 2.175e-113
Identity = 200/245 (81.63%), Postives = 217/245 (88.57%), Query Frame = 2
Query:   65 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLE-TNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRV*RFPHIYGPFGTWKGGRXKL-LLFLPKGSYLTDKLK-WGRWT*TRLY 787
            MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEFKQLE TNVSLKESDAWPAEPQDAYGLEKLA+EELCKHY KDFGIECR+ RF +IYGPFGTWKGGR K    F  K    TD+ + WG    TR +
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSF 245          
BLAST of EY753936 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 406.757 bits (1044), Expect = 8.264e-113
Identity = 199/233 (85.41%), Postives = 209/233 (89.70%), Query Frame = 2
Query:   95 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRV*RFPHIYGPFGTWKGGRXKL-LLFLPKGSYLTDKLK-WGRWT*TRLY 787
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQL+T VSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRV RF +IYGPFGTWKGGR K    F  K    TD+ + WG    TR +
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSF 239          
BLAST of EY753936 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12
Identity = 53/232 (22.84%), Postives = 100/232 (43.10%), Query Frame = 2
Query:  140 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRV*RFPHIYGPFGTWKGGRXKLLLFLPK------GSYLTDKLKWGRWT*TRLYLHDNGLKGA 814
            K R+ + G  G + S I R+L+  G   +    +   ++ +    H+F              ++ +D V+  AA +GG+    +  +  +Y N MI  N++ A+  + V +  +  S+CIYP+  KQ      L +    P    + Y + K+A  +LC+ Y + +G + R     ++YGP   +      ++  L +           D + WG  T  R +LH + +  A
Sbjct:    3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF------------ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAA 220          
BLAST of EY753936 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 2
Query:  143 LRISVTGAGGFIASHIARRL-KSEGHYIIASD--------WKKNEHMTEDMFCHEFHLVDLRVMDNCL-KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFK-QLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRV*RFPHIYGP 679
            ++I VTGA GFI SH+   L K + H +I  D          K +++   +    F  +   ++   L  + +GVD +F+LAA  G      ++      +N      +LEA R   ++ F +AS++ +Y E + ++  N SL         P   YG+ KL  E+LC  Y + FGI   + RF  +YGP
Sbjct:    1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQTFVFASTSSVYGEKQGKVSENTSLS--------PLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP 182          
The following BLAST results are available for this feature:
BLAST of EY753936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GME1_ORYSJ1.609e-11684.96GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI7.986e-11684.55GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH2.175e-11381.63GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ8.264e-11385.41GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
FCL_ECOLI6.302e-1222.84GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
YTCB_BACSU5.335e-1129.47Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-F05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753936 ID=EY753936; Name=EY753936; organism=Citrus sinensis; type=EST; length=863bp
CCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACTCTCAAAGTTC
AGGTGTTTTTCAGAATGGGAAGTACTGAAGGAACCTATGGTGCATACACC
TATGAGGAGCTTGAGAGGGAACCTTACTGGCCTTCCGAGAAGCTCCGAAT
TTCTGTCACTGGGGCAGGTGGTTTTATTGCCTCCCACATTGCTCGGCGTC
TGAAGAGTGAAGGCCATTACATTATTGCTTCTGACTGGAAGAAGAATGAG
CACATGACTGAGGATATGTTCTGTCATGAATTCCACCTTGTTGACCTTAG
GGTCATGGACAATTGCTTGAAAGTTACTAAGGGGGTTGACCATGTGTTTA
ACCTTGCTGCTGATATGGGTGGTATGGGCTTTATTCAGTCCAACCACTCT
GTCATCATGTATAACAATACCATGATCAGCTTCAACATGCTTGAGGCTTC
TAGGATCAGTGGAGTAAAGAGGTTTTTCTATGCCTCTAGTGCCTGCATCT
ATCCCGAATTTAAGCAGCTGGAAACTAACGTAAGCTTGAAGGAGTCTGAT
GCCTGGCCCGCTGAGCCTCAAGATGCTTATGGCTTGGAGAAGCTTGCAAG
TGAGGAGTTGTGTAAGCACTACACGAAAGACTTTGGAATTGAGTGTCGTG
TTTGAAGATTCCCACATATTTATGGGCCTTTTGGAACATGGAAAGGTGGA
AGGNAAAAGCTNCTGCTGTTTTTGCCGAAAGGCTCTTACTTAACTGACAA
GTTGAAATGGGGGAGATGGACTTAAACTCGTCTTTACCTTCATGATAATG
GGTTGAAGGGTGCTCAATGAACAATCAAACTCCGGGACCAGTGACTTGGN
AGGATGAATGGTA
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