GE213208

Overview
NameGE213208
Unique NameGE213208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length340
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4363 contig Csv1_Contig4363:349..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213208 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.644e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = -2 
Query:  142 THNRMLERTGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 315
            THNRML+R GNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYLTR
Sbjct:   65 THNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLTR 122
[Close]
BLAST of GE213208 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 33/61 (54.10%), Postives = 51/61 (83.61%), Query Frame = -2 
Query:  130 HNRMLERTGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR*MIY 312
            HNR+L++ GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+YYL R + Y
Sbjct:   67 HNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLLNY 127
The following BLAST results are available for this feature:
BLAST of GE213208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET11_ARATH4.644e-2181.03Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
BET12_ARATH2.468e-1454.10Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank description50 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213208 ID=GE213208; Name=GE213208; organism=Citrus sinensis; type=EST; length=340bp
AGAATACAAACTCTTTATACAACCACAAACGAGTTCCTTACATGCAACAT
GTAAGATTGATTACATAACCACATAAAAATGGGGTCATCCCAATTCTAAC
ATAAAGCTGCTGGCGTTATCAAATACATCATAAATCATTTACCTAGTGAG
ATAGTATACAATTAGGAAAATGACCACAAATGATGCAACAAGGGTAAACA
TTCTCCTGCTCGATTTGGTCTCGAAAACCATTTTAAACTTATCCATGGTT
CCTGATAGGACTCCTCTTGAAGCATCCATATCATTTCCCGTCCGTTCCAA
CATGCGATTGTGTGTGACCTGCCCGGGCGGCCGCTCGAAA
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