EY753933

Overview
NameEY753933
Unique NameEY753933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753933 vs. ExPASy Swiss-Prot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 8.784e-77
Identity = 100/171 (58.48%), Postives = 132/171 (77.19%), Query Frame = 2
Query:  203 KHRDNLILMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCLIELDPSVTHVVSTDARTEKSRWATKEAKFLVDPRWIKTANFLWQRATRRDFSVKQ 715
            KH+DNLI++ERYHFF+SSCRQF +  +SLS+L+SDESE +GALA+VLKVLK+ H +FF+ +   ++ RDVR +LK VR E+LKGCK+VFS VFPTK   + H LWKMAE+LGATC  E+D SVTHVV+ D  TEK+RWA +E K++V   WI  AN+LW +    +F ++Q
Sbjct:  261 KHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQ 431          

HSP 2 Score: 93.5893 bits (231), Expect = 8.784e-77
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   31 RPYALEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTENAW 198
            R YA +MAKLLDP  EYF  RVISRDDGT RH+K LDVVLGQESAVLILDDTENAW
Sbjct:  204 RNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQESAVLILDDTENAW 259          
BLAST of EY753933 vs. ExPASy Swiss-Prot
Match: CPL3_ARATH (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.193e-39
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  203 KHRDNLILMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMVRGEVLKGCKLVFSHVFPT-KFPADTHYLWKMAEQLGATCLIELDPSVTHVVSTDARTEKSRWATKEAKFLVDPRWIKTANFLWQRATRRDFSV 709
            +H+ NLI +ERY +F  S RQFG    SL +L  DE   EG LAS L V+++IH  FF   + D    DVR +L   + ++L GC++VFS + P  +     H LW+ AEQ GA C  ++D  VTHVV+    T+K  WA    +F+V P W++ + FL+QRA    +++
Sbjct: 1072 QHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEV--DVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRANENLYAI 1239          

HSP 2 Score: 52.373 bits (124), Expect = 5.193e-39
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   37 YALEMAKLLDPSREYFNARVISRD------DGTQR--HQKGLDVVLGQESAVLILDDTENAW 198
            YA EMAKLLDP    FN RVIS+       DG +R    K L+ V+G ES+V+I+DD+   W
Sbjct: 1009 YATEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVW 1070          
The following BLAST results are available for this feature:
BLAST of EY753933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPL4_ARATH8.784e-7758.48RNA polymerase II C-terminal domain phosphatase-li... [more]
CPL3_ARATH5.193e-3940.59RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-F02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753933 ID=EY753933; Name=EY753933; organism=Citrus sinensis; type=EST; length=867bp
CCGGNATTCCAAAGCCGACCCACGCGTCCGAGGCCTTATGCTTTAGAAAT
GGCTAAGTTGCTTGATCCCAGCAGAGAGTACTTCAATGCTAGAGTGATTT
CACGAGATGATGGCACTCAAAGACATCAGAAGGGCCTTGATGTGGTACTG
GGGCAAGAAAGTGCTGTTCTGATTCTTGATGACACAGAAAACGCATGGTA
CGAAGCACAGAGACAATTTGATACTGATGGAAAGATATCATTTCTTTGCT
TCAAGTTGTCGCCAATTTGGCTACCACTGTCAATCTCTATCTCAGTTGAG
GAGTGATGAAAGTGAGCTAGAGGGTGCACTTGCATCTGTTCTTAAAGTTC
TCAAGCGAATCCACAATATTTTCTTCGATGAACTTGCGAACGATCTTGCT
GGCAGAGATGTGAGGCAGGTGCTCAAAATGGTCCGGGGGGAAGTCTTAAA
GGGGTGTAAACTTGTCTTCAGTCATGTTTTTCCAACTAAATTCCCAGCAG
ATACTCACTATCTATGGAAGATGGCGGAGCAGTTAGGAGCCACGTGCTTG
ATAGAACTTGATCCATCAGTGACACATGTGGTTTCAACAGATGCTCGAAC
AGAAAAGTCTCGCTGGGCAACAAAGGAAGCTAAGTTTTTGGTGGATCCCA
GGTGGATAAAGACAGCCAATTTTTTGTGGCAAAGGGCAACCCGAAGAGAC
TTTTCTGTGAAACAAACAAACCCTGAAAGACCTTTCTTGCGAAACAATGA
AGGTTCATTACGGAAAAATTTATGTAGCTGCTAACCCTGCGGGAATTTTT
ATGTTTGTTACAGGTGTTAAGAATGCTTGCCTGGGAAATTTTCAGTAAAG
TTGGCCCACACCTCGAA
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