GE213207

Overview
NameGE213207
Unique NameGE213207
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length289
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:307..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213207 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.890e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = -2 
Query:  109 GTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 270
            G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   96 GATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of GE213207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH2.890e-1875.93Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank description49 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213207 ID=GE213207; Name=GE213207; organism=Citrus sinensis; type=EST; length=289bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAATGATATGCTGGATTTCTTTTT
ATTCTTGGGTCACATTGCAGTGAGTAAGTGAACACCGTCCAGAAATTCAC
TCTTCTACAACATTCACAAGCTCATATTCAATCAGAGAGAGGTTGTTATC
TTCCTTCACGGTGAAATTGGCAGGCTCTGCAACTTCAACACGGCCCCACT
TGTCCACAGCAAGTCTCATTGATCCTTTAAACATGTCAATTTTTGCATTG
CGCAGAATCACAGTAGTACCTCGGCCGCGACCACGCTAA
back to top