GE213205

Overview
NameGE213205
Unique NameGE213205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:1090..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:   21 GVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.694e-23
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:   45 GAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.889e-23
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV IPYKIS ST+C+ V+
Sbjct:   21 GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:   46 GAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 45/71 (63.38%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:   47 GAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:   47 GAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.405e-23
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = -1
Query:  138 GPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            GP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV+IPYKISTST+C+ V+
Sbjct:   38 GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = -1
Query:  138 GPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            GP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV IPYKISTST+C+ V+
Sbjct:   46 GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = -1
Query:  138 GPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            GP P P CC GV+ L AAA TTPDRQ ACNC+K AA SI  LN NNAA LPG CGV+IPYKISTST+C+ V+
Sbjct:   45 GPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of GE213205 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = -1
Query:  138 GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            G +P  CCNG+R++N  ARTTPDR+TACNCLKQ + SI  +N NNAA LPG CGV+IPYKIS ST+C+ V+
Sbjct:   21 GAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of GE213205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
LTP1_MORNI5.821e-2471.83Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_MALDO1.694e-2366.20Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE2.889e-2364.79Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_HELAN4.928e-2367.61Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU4.928e-2363.38Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV6.436e-2361.97Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP4_LENCU8.405e-2370.83Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU1.098e-2270.83Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP5_LENCU1.098e-2269.44Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP1_PRUAR1.098e-2264.79Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]

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Properties
Property NameValue
Genbank description47 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213205 ID=GE213205; Name=GE213205; organism=Citrus sinensis; type=EST; length=374bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAAAGTGTAGAGAGAGACTCATAA
ATCGGACACAAAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAA
CTTAAACCTGAAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTAGAG
CAGTCAGTGGAGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCC
TGGAAGACCAGCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGG
CTTGCTTCAAGCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCG
GCAGCGTTGAGAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCC
GCACCTCGGCCGCGACCACGCTAA
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