EY753924

Overview
NameEY753924
Unique NameEY753924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.839e-59
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 2
Query:   59 MPDKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 424
            M +KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKE LARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.533e-57
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 2
Query:   59 MPDKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 424
            M +KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKE LARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.122e-39
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY753924 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 2
Query:   74 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEMLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 421
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V K E++E LA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
The following BLAST results are available for this feature:
BLAST of EY753924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH2.839e-5991.8040S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH4.533e-5787.7040S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT5.035e-4071.5540S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB5.035e-4071.5540S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE5.035e-4071.5540S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU5.035e-4071.5540S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN5.035e-4071.5540S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN5.035e-4071.5540S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA1.122e-3970.6940S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_MACFA3.263e-3970.6940S ribosomal protein S24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-008-E04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753924 ID=EY753924; Name=EY753924; organism=Citrus sinensis; type=EST; length=699bp
ATTCACAAACTGACCCACGCGTCCGGTCGAGGATTAGCAGACTTTTAACC
AACCAACAATGCCGGACAAGGCTGTCACCATTCGAACTAGGAAGTTCATG
ACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTTCATCC
TGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGATGTTGGCAAGGA
TGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAAGTTCCGAACT
CACTTTGGAGGTGGGAAATCTACCGGCTTTGGTCTGATCTATGATTCAGT
TGACAGTGCTAAGAAGTTTGAGCCCAAGTACAGGCTTATCAGGAATGGAC
TTGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAAAGGAAGAAC
AGGGCTAAGAAGATCCGTGGTGTAAAGAAGACCAAGGCCTCAGATGCTGC
CAAGAAGAAGTGAGCAATTGGAGATTCTTCTGTAGTCTCGAAGCCAATTT
TCTGTGATGGAGTTTCTATAATAGTCTTTTTTTTTTTTGGTTTAGTTCCT
GAAATGAAATCTAGTGTGTTGTGGATTTTGGTGCCATTGGATGTTTANTT
ATATTTGCAGATTTTGAGTACTCCCCCGAAAGACATTTTTGAGTTTTGAA
TGGCAATACATTCGACTTTAACCCTTGTGTTAAAAAAAAAAAAAAAAAA
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