GE213198

Overview
NameGE213198
Unique NameGE213198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length238
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:216..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.010e-23
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            SSFHRVIPGFMCQ            ESIYG+KFADENF+KKHTGPGILSMANAGP TNGSQFF+CT
Sbjct:   58 SSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICT 123          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.010e-23
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            SSFHRVIPGFMCQ            ESIYG+KF DENF+KKHTGPG+LSMANAGPGTNGSQFF+CT
Sbjct:   36 SSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICT 101          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-23
Identity = 50/66 (75.76%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            S+FHRVIPGFMCQ            ESIYG+KF DENFVKKHTGPGILSMANAGPGTNGSQFF+CT
Sbjct:   58 STFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICT 123          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.242e-22
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            S+FHRVIP FMCQ            ESIYG+KFADENF+K+HTGPGILSMANAG GTNGSQFF+CT
Sbjct:   58 STFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICT 123          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.234e-21
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            SSFHR+IPGFMCQ            +SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT
Sbjct:   51 SSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.234e-21
Identity = 48/66 (72.73%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            SSFHRVIP FMCQ            ESIYGSKF DENF+KKHTGPGILSMANAG  TNGSQFF+CT
Sbjct:   59 SSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICT 124          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.612e-21
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            SSFHR+IPGFMCQ             SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT
Sbjct:   51 SSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.612e-21
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            SSFHR+IPGFMCQ             SIYG KF DENF+ KHTGPGILSMANAGP TNGSQFF+CT
Sbjct:   51 SSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICT 116          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.750e-21
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            S+FHR+IPGFMCQ            ESIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT
Sbjct:   58 SAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICT 123          
BLAST of GE213198 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.591e-21
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   23 SSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCT 220
            S FHRVIPGFMCQ            ESIYG+KF DENF+KKHTG GILSMAN+GP TNGSQFF+CT
Sbjct:   58 SIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICT 123          
The following BLAST results are available for this feature:
BLAST of GE213198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CYPH_CATRO1.010e-2375.76Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE1.010e-2374.24Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CYPH_SOLLC1.722e-2375.76Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU4.242e-2271.21Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
PPIA_RAT1.234e-2169.70Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
CP19A_ARATH1.234e-2172.73Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
PPIA_MOUSE1.612e-2169.70Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_CRIGR1.612e-2169.70Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CP19C_ARATH2.750e-2169.70Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
CP18D_ARATH3.591e-2169.70Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]

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Properties
Property NameValue
Genbank description40 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213198 ID=GE213198; Name=GE213198; organism=Citrus sinensis; type=EST; length=238bp
ATTAGCGTGGTCGCGGCCGAGGTCGTCCTTCCACCGTGTGATCCCCGGAT
TCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAA
TCAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACAC
CGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGAT
CTCAGTTCTTCGTCTGTACCTGCCCGGGCGGCCCGAAA
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