GE213197

Overview
NameGE213197
Unique NameGE213197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4122 contig Csv1_Contig4122:544..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.743e-28
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = -2
Query:  109 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 312
            +YCLLG+L+ EVGWNYYDTI+ELEKKRKERSQV YERKKQLNKLR KAE+VA+EKLGSQLDILAPVKY
Sbjct:  138 KYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.625e-28
Identity = 58/68 (85.29%), Postives = 64/68 (94.12%), Query Frame = -2
Query:  109 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 312
            +YCLLGRL+ EVGWN+YDTI+ELE KRKERSQV YERKKQLNKLR KAEKVAEE+LGSQLD+LAPVKY
Sbjct:  139 KYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.476e-27
Identity = 57/68 (83.82%), Postives = 64/68 (94.12%), Query Frame = -2
Query:  109 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 312
            +YCLLGRL+ EVGWN+YDTI+ELE KRKER+Q  YERKKQL+KLRAKAEKVAEEKLGSQLD+LAPVKY
Sbjct:  139 KYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.288e-27
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = -2
Query:  109 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 312
            +YCLLGRL+ EVGWN+YDTI+ELE KRKER+ V YERKKQLNKLR KAEKVAEEKLG+QLDILAPVKY
Sbjct:  139 KYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = -2
Query:  109 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 312
            +YCLLGRL+ EVGWN+YDTI+ELE KRKERSQ  YERKKQL KLRAKAEKVAEEKLGSQLD+LA +KY
Sbjct:  139 KYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.136e-18
Identity = 40/68 (58.82%), Postives = 60/68 (88.24%), Query Frame = -2
Query:  109 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDILAPVKY 312
            +YCLLGRL+ EVGW+++DTI ELE+KRK ++QV+YER+KQL KLR+KA ++AE++L  ++++LA +KY
Sbjct:  139 KYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of GE213197 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.358e-11
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = -2
Query:  124 RYCLLGRLAFEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEEKLGSQLDIL 312
            ++  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+K+G   ++L
Sbjct:  134 KFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
The following BLAST results are available for this feature:
BLAST of GE213197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RL13A_LUPLU1.743e-2886.7660S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
R13A3_ARATH6.625e-2885.2960S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A1_ARATH1.476e-2783.8260S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A4_ARATH3.288e-2783.8260S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A2_ARATH2.131e-2682.3560S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_PICMA2.136e-1858.8260S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_BOVIN7.358e-1147.6260S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
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Properties
Property NameValue
Genbank description39 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213197 ID=GE213197; Name=GE213197; organism=Citrus sinensis; type=EST; length=319bp
CTAGTTGTATCAAATTCTTAGCTTCTAAAAGTCTTGAACAAAGTCGAAAA
CACAAAGGAAATTCAAGACAATGCCCAACAAAATTGTTCTCAACAAGCTA
ACTGATCAATATTTGACAGGAGCAAGGATGTCCAATTGCGAGCCAAGTTT
CTCTTCTGCAACCTTCTCAGCCTTAGCCCTAAGTTTGTTGAGCTGCTTCT
TCCTCTCATAAGCCACCTGTGACCTCTCCTTTCTCTTCTTCTCAAGCTCC
CTGATGGTGTCATAATAATTCCATCCAACCTCAAATGCCAGGCGACCTAA
CAAGCAGTACCTCGGCCGC
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