GE213185
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.036e-52 Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 NVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN GI RE MELRKD Sbjct: 114 NVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 5.881e-48 Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 NVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L DGI E M+LRKD Sbjct: 114 NVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.003e-47 Identity = 93/110 (84.55%), Postives = 101/110 (91.82%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 NVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK FASATERDIYTGDKLEIVV+NK G REY++LRKD Sbjct: 112 NVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23 Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 N++GGLD EG+G VY++D VGSY+R Y + GS S ++ P LDNQ+ + PLS+ +AV LVK F SA ERD+YTGD L+I ++ K+GI E + LRKD Sbjct: 132 NIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23 Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 N++GGLD EG+G VY++D VGSY+R Y + GS S ++ P LDNQ+ + PLS+ +AV LVK F SA ERD+YTGD L+I ++ K+GI E + LRKD Sbjct: 133 NIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22 Identity = 53/110 (48.18%), Postives = 75/110 (68.18%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 N++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+ + ++ V S + V VK SA ERDIYTGD +IVV++K+G+H E EL+ D Sbjct: 130 NLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21 Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 N++GGLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK F SA ERD+YTGD L I ++ K+GI E + LRKD Sbjct: 136 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 N++GGLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + + PLS A+ LVK F SA ERD+YTGD L++ ++ K+GI E + LRKD Sbjct: 136 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21 Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = -1 Query: 195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524 N++GGLD EGKG VY++D VGSY+R + + GS S ++ P LDNQ+ + + PL+ A+ LVK F SA ERD+YTGD L I ++ K+GI E + LRKD Sbjct: 135 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_YEAST (Proteasome component C5 OS=Saccharomyces cerevisiae GN=PRE7 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -1 Query: 195 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 521 ++ GLD +GKG VY++D VGSYER + G+ ++LIMPFLDNQ+ + V LS E + LV+ F SATER I GD LEI+++ KDG+ +E+ EL++D Sbjct: 129 IIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 241 The following BLAST results are available for this feature:
BLAST of GE213185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213185 ID=GE213185; Name=GE213185; organism=Citrus sinensis; type=EST; length=578bpback to top |