GE213185

Overview
NameGE213185
Unique NameGE213185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:436..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.036e-52
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            NVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASATERDIYTGD+LEIV+LN  GI RE MELRKD
Sbjct:  114 NVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATERDIYTGDRLEIVILNASGIRREEMELRKD 223          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.881e-48
Identity = 94/110 (85.45%), Postives = 100/110 (90.91%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            NVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASATERDIYTGDKLEI++L  DGI  E M+LRKD
Sbjct:  114 NVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.003e-47
Identity = 93/110 (84.55%), Postives = 101/110 (91.82%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            NVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASATERDIYTGDKLEIVV+NK G  REY++LRKD
Sbjct:  112 NVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKREYIDLRKD 221          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K+GI  E + LRKD
Sbjct:  132 NIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 237          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.547e-23
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA ERD+YTGD L+I ++ K+GI  E + LRKD
Sbjct:  133 NIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDALKICIITKEGIREEIVPLRKD 238          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 53/110 (48.18%), Postives = 75/110 (68.18%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            N++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA ERDIYTGD  +IVV++K+G+H E  EL+ D
Sbjct:  130 NLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSAGERDIYTGDFADIVVVDKNGVHWEKFELKLD 236          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L I ++ K+GI  E + LRKD
Sbjct:  136 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD 241          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA ERD+YTGD L++ ++ K+GI  E + LRKD
Sbjct:  136 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISAAERDVYTGDALKVCIVTKEGIRGETVPLRKD 241          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  195 NVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 524
            N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA ERD+YTGD L I ++ K+GI  E + LRKD
Sbjct:  135 NIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVPLRKD 240          
BLAST of GE213185 vs. ExPASy Swiss-Prot
Match: PSB1_YEAST (Proteasome component C5 OS=Saccharomyces cerevisiae GN=PRE7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  195 VLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTP----LSEAEAVDLVKTCFASATERDIYTGDKLEIVVLNKDGIHREYMELRKD 521
            ++ GLD +GKG VY++D VGSYER    + G+ ++LIMPFLDNQ+   +         V      LS  E + LV+  F SATER I  GD LEI+++ KDG+ +E+ EL++D
Sbjct:  129 IIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 241          
The following BLAST results are available for this feature:
BLAST of GE213185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSB1_PETHY1.036e-5291.82Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH5.881e-4885.45Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ1.003e-4784.55Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1B_CARAU6.547e-2348.18Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU6.547e-2348.18Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_DICDI9.454e-2248.18Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1_HUMAN2.751e-2147.27Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN6.128e-2146.36Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_MOUSE8.004e-2146.36Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_YEAST6.775e-2044.25Proteasome component C5 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank description27 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213185 ID=GE213185; Name=GE213185; organism=Citrus sinensis; type=EST; length=578bp
ATTTCGAGCGGCCGCCCGGGCAGGTACAAGAAAATAACATCATCACTGCA
ACATATGCACTAGTAAGGAAAGTTATATCAAACTGGATTCATAAGAAAAT
GTTAAACCACGACAACACAAGAACACTGAGAACTTGCTGATGGCAGCTCC
ACCTACTTCAGCTTGACCAGTGTGGCATGATTCCAAAGAGATTAATCCTT
CCTCAGTTCCATGTATTCACGATGAATACCATCTTTGTTTAGGACAACAA
TTTCAAGTTTGTCTCCCGTGTATATGTCCCTCTCAGTTGCTGATGCAAAA
CAAGTTTTGACCAAATCAACTGCTTCAGCCTCTGAAAGAGGAGTAACAGC
ATCCTGGGCAGGCAATAGGAGAGGACTGGGAGACTTTAGTTGGTTATCGA
GGAATGGCATGATGAGCGTGGAACCAGAACCCTGGGAGCTATATCCAACC
CTCTCATAGGAACCAACAGCATCATATGTGTAGACACAACCCTTCCCTTC
ATTGTCAAGCCCACCCAAGACATTAAATGAATAGTAAGGAAAGAAACGTT
TGTAGTACCTCGGCCGCGACCACGCTAA
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