EY753785

Overview
NameEY753785
Unique NameEY753785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753785 vs. ExPASy Swiss-Prot
Match: CNOT2_MOUSE (CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.176e-18
Identity = 60/177 (33.90%), Postives = 83/177 (46.89%), Query Frame = 3
Query:    3 LNSTXNLHKTFGSPWSDEPAKG-DPEFTVPQCYYAK-----QPPALHQGYFSKFTVETLFYIFYRCFSLIYFCFVLDTSSKPFFFFCT*QSWFSLFCSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 515
            LNS  NL+  F SPW+  P +  D +F VP  Y        +  A+  G + +   + LFY++Y                                     D  QL AA EL+NR W YHKE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:  389 LNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGE---DLLFYLYYMNGG---------------------------------DVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528          
BLAST of EY753785 vs. ExPASy Swiss-Prot
Match: CNOT2_HUMAN (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.176e-18
Identity = 60/177 (33.90%), Postives = 83/177 (46.89%), Query Frame = 3
Query:    3 LNSTXNLHKTFGSPWSDEPAKG-DPEFTVPQCYYAK-----QPPALHQGYFSKFTVETLFYIFYRCFSLIYFCFVLDTSSKPFFFFCT*QSWFSLFCSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 515
            LNS  NL+  F SPW+  P +  D +F VP  Y        +  A+  G + +   + LFY++Y                                     D  QL AA EL+NR W YHKE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:  389 LNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGE---DLLFYLYYMNGG---------------------------------DVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528          
BLAST of EY753785 vs. ExPASy Swiss-Prot
Match: NOT2_SCHPO (General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe GN=not2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.361e-17
Identity = 58/164 (35.37%), Postives = 76/164 (46.34%), Query Frame = 3
Query:   39 SPWSDEPAK---GDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYRCFSLIYFCFVLDTSSKPFFFFCT*QSWFSLFCSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH 521
            SPW++   K     P F +P CY    PP      F +F+ ETLFYIFY                                 +MP+D  Q  AA EL NR W +HKE R+W   VP ++PL +T  +ERG Y  FDP  ++ I+KD F++ Y  LE R     H
Sbjct:   47 SPWAELNTKKPVSQPMFKLPACYKNVNPPPAISKIF-QFSDETLFYIFY---------------------------------TMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDRAQSAVH 175          
The following BLAST results are available for this feature:
BLAST of EY753785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CNOT2_MOUSE2.176e-1833.90CCR4-NOT transcription complex subunit 2 OS=Mus mu... [more]
CNOT2_HUMAN2.176e-1833.90CCR4-NOT transcription complex subunit 2 OS=Homo s... [more]
NOT2_SCHPO5.361e-1735.37General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-H04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753785 ID=EY753785; Name=EY753785; organism=Citrus sinensis; type=EST; length=904bp
ACTTGAATTCAACANAAAATCTTCACAAAACTTTTGGTTCGCCGTGGTCT
GATGAACCAGCAAAGGGTGACCCAGAGTTCACTGTGCCGCAATGTTATTA
CGCTAAACAACCACCTGCTCTACATCAAGGTTATTTTTCAAAGTTCACGG
TGGAGACATTATTTTATATATTCTACAGGTGCTTCTCTTTAATTTATTTT
TGTTTCGTTTTGGATACCTCTTCAAAACCTTTTTTTTTTTTTTGCACTTA
GCAATCATGGTTCTCTCTCTTTTGCAGCATGCCTAAAGACGAAGCCCAAT
TATATGCTGCAAATGAACTTTACAATAGAGGTTGGTTTTATCACAAGGAA
CATCGGTTGTGGTTCATCAGAGTCCCCAATGTCGAGCCATTAGTTAAAAC
AAATGCATACGAGAGAGGATCTTATCACTGTTTTGATCCTAACACATTTG
AAACAATCCGCAAGGATAATTTCGTTGTCCATTATGAGATGTTGGAAAAG
AGACCAGCTCTTCCTCAACATTAACAAGATATTTTTTGAATTTACATTGT
AAAGTTTCTGTTGTGGAGCTCATTCATTAGAACGTAAGTCAGCTTGCAGC
ATTAATGTTTATTTGAATTTAGTAAATTGGTGCGTCAATGTTGTTGCAAG
TATTGGCCGNCCATTTAGCTTCATAATTCTTNCCCACCCCCTCTTCCCCT
TTTTTGTGTAATACTATGCAAAGCAATTTCTCAAAGTTATATGACAAGGT
ACTCATGTATCTTAAGAAATAGATCNGGTNANNNAAAAAANNNNANNNNN
NNNNNAAAANNNNAAAGGCGGCCGCTTTAAAGATCCAGACTACGTACGCG
GCCTGCGACGAATAGCTTTTTTTAAGGGACCTAATTCATTCCTGCCCGCG
TTTA
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