EY753770

Overview
NameEY753770
Unique NameEY753770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9956 contig Csv1_Contig9956:260..1162. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753770 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.924e-24
Identity = 55/150 (36.67%), Postives = 85/150 (56.67%), Query Frame = 2
Query:  200 LRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTXIEK 646
            L L KP  +     +P++I+FHGG +   SA++ I+   C +L      +++SVDYR +PEHR P A+DD   ++ WV+ +     WL+   D +   +L G SSGG IA++  +RA +        VK++G +L  P FGG +RT  EK
Sbjct:   94 LELTKP--LSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV----WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN------EGVKVLGNILLHPMFGGQERTQSEK 231          

HSP 2 Score: 33.113 bits (74), Expect = 7.924e-24
Identity = 19/60 (31.67%), Postives = 25/60 (41.67%), Query Frame = 1
Query:  622 GPEDXNREKMIDDK-LCPLSATDLMWDLSLPKGADRDHEYCIPIASVKPTIRSDGCPVXL 798
            G E    EK +D K    +   D  W   LP+G DRDH  C P      +++    P  L
Sbjct:  223 GQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSL 282          
BLAST of EY753770 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.484e-22
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  221 DIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADL-SKCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTXIEKR 649
            D P     P+II+FHGG ++  SA + I+ + C +       +++SV+YR APEHR P A+DD   +++WV  Q    P++R   D  ++ FL G SSGG IA+H  +RA D        VK+ G +L    FGG +RT  E+R
Sbjct:  106 DAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQ----PFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD------EGVKVCGNILLNAMFGGTERTESERR 239          
BLAST of EY753770 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.238e-22
Identity = 70/204 (34.31%), Postives = 109/204 (53.43%), Query Frame = 2
Query:   86 DGSLTRH-NKF--PTVPPSASITDQLALSKDVPLNPQNKTFLRLFKPKDI---PPNTKL---------PLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTXIEKR 649
            DG+  RH  +F    VP +A+  + +  S DV ++ Q     R+++P D    P  T L         P+I++FHGG +   SA++ I+   C +L     A+++SV+YR APE+R P A+DD    ++WV   +    WLR   D   + FL G SSGG I ++  +RA++      S + ++G +L  P FGG +RT  EKR
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGV-FSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE------SRIDVLGNILLNPMFGGTERTESEKR 230          
BLAST of EY753770 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.533e-21
Identity = 56/155 (36.13%), Postives = 85/155 (54.84%), Query Frame = 2
Query:  185 QNKTFLRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGGVQRTXIEK 646
            Q  + L L KP D      +P+I++FHGG +   SA++ I+   C +L      +++SV+YR APE+  P A+DD   ++ WV  ++    WL+   D     FL G SSGG IA++  LRA +      S + ++G +L  P FGG +RT  EK
Sbjct:   90 QPPSILDLEKPVD---GDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE------SGIDVLGNILLNPMFGGNERTESEK 231          

HSP 2 Score: 30.8018 bits (68), Expect = 1.533e-21
Identity = 16/45 (35.56%), Postives = 21/45 (46.67%), Query Frame = 1
Query:  622 GPEDXNREKMIDDK-LCPLSATDLMWDLSLPKGADRDHEYCIPIA 753
            G E    EK +D K    +   D  W   LP+G DR+H  C P +
Sbjct:  223 GNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFS 267          
The following BLAST results are available for this feature:
BLAST of EY753770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH7.924e-2436.67Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ2.484e-2238.89Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH4.238e-2234.31Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH1.533e-2136.13Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-F12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753770 ID=EY753770; Name=EY753770; organism=Citrus sinensis; type=EST; length=901bp
AAGTAACAGAGTGGTGGCAATGGCAGAAGAACAAATTCAATGTTCCGTAG
ACCCTTTTGAGTTACTCAAAATCTCCCTCAACTCGGACGGCTCACTCACG
AGACACAACAAATTCCCCACTGTTCCGCCATCGGCATCGATAACCGACCA
GCTCGCCCTCTCCAAAGATGTCCCACTCAACCCCCAAAACAAAACTTTCC
TTCGCTTATTTAAACCCAAGGATATTCCCCCCAACACAAAGCTCCCTCTT
ATTATATACTTCCATGGCGGCGGCTACATTTTGTTCAGTGCTGACGCTTT
CATTTTTCACAACTCGTGCTGCCAACTGGCGGCTTTTATCCCCGCTTTAA
TCCTGTCGGTTGATTACCGTCTCGCCCCCGAACACCGCCTTCCTGCAGCC
TTTGATGACGCCATGGAATCCATCCAGTGGGTCCGCGACCAGGCTCTTGG
TGACCCGTGGCTGAGAGATTACGCCGATCTATCCAAGTGTTTTCTGATGG
GCTCCAGCTCTGGCGGCGGCATCGCTTACCATGCCGGGTTACGTGCATTG
GACTTGGATGCTGATCATCTTTCGCCGGTGAAGATCGTAGGGCTCGTGCT
CAATCAGCCATTTTTCGGTGGGGTCCAGAGGACTNGAATCGAGAAAAGAT
GATCGACGACAAGCTCTGTCCGTTGAGTGCAACGGATCTCATGTGGGACC
TGTCGTTGCCGAAGGGTGCNGATCGCGATCATGAATATTGCATTCCGATC
GCAAGTGTGAAACCTACGATAAGATCGGACGGCTGCCCAGTANTTTTGTG
GGAAGACGCGAGGGGGACCCCGTGATCGCCAGACAAAAGAGTATCAAAAA
TGTAAAGCGCGCGGAGTGCCCGTGTGCCCATTTTGACGATGGTACCACCA
T
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