EY753713

Overview
NameEY753713
Unique NameEY753713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753713_ssr607 microsatellite EY753713_ssr607:607..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.164e-18
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3 
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARLSDV 212
            AV++RTRKFM +RLLSRK FVIDVLHPGRA VSKA+L+E  AR+ +V
Sbjct:    5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEV 51

HSP 2 Score: 45.4394 bits (106), Expect = 1.164e-18
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIG 349
            FVFK R HFGGGKS+ FGL+  +   A+KF P  RLI  G
Sbjct:   58 FVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNG 97
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.784e-17
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARLSDVWGRRSSLC 236
            AV++RTR FM +RLL+RK FVIDVLHPGRA VSKA+L+E  AR+ +V    +  C
Sbjct:    5 AVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFC 59

HSP 2 Score: 41.5874 bits (96), Expect = 7.784e-17
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIG 349
            F FK R HFGGGKS+ +GL+  +   A+KF P  RLI  G
Sbjct:   58 FCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNG 97
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 56.225 bits (134), Expect = 5.480e-14
Identity = 24/44 (54.55%), Postives = 36/44 (81.82%), Query Frame = 3 
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            AV++RTRKFM +RLL RK  V+D+LHPG+A +SK +++E  A++
Sbjct:    4 AVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQM 47

HSP 2 Score: 42.743 bits (99), Expect = 5.480e-14
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 2 
Query:  236 FKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIGRASVVLSAGR 379
            F  R HFGGG+ST F L+  S    +KF P  RL+ +G+A  +    R
Sbjct:   58 FGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVAR 105
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 52.373 bits (124), Expect = 2.629e-13
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            AV++RTRK + + LL+RK FV+DVLHP RA VSK +L+E  A +
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEV 47

HSP 2 Score: 44.2838 bits (103), Expect = 2.629e-13
Identity = 26/49 (53.06%), Postives = 28/49 (57.14%), Query Frame = 2 
Query:  233 VFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIGRASVVLSAGR 379
            VF  R  FGGGKS  FGLV  S A A+KF P  RL+  G A  V  A R
Sbjct:   57 VFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASR 105
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 57.7658 bits (138), Expect = 3.427e-13
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 3 
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQE 188
            AV++RTRKFM +RLL RK  V+D+LHPG+A +SK DL+E
Sbjct:    4 AVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLRE 42

HSP 2 Score: 38.5058 bits (88), Expect = 3.427e-13
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 2 
Query:  236 FKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIGRASVVLSAGR 379
            F  R H+GGG++T F L+       +KF P  RL+ +G A  +    R
Sbjct:   58 FGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVAR 105
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.741e-12
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 3 
Query:   72 AVSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARLSDV 212
            AV +RTRK + +RLLSRK FV++V+HPG+A VSK DL+   A+L  V
Sbjct:    5 AVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKV 51

HSP 2 Score: 35.8094 bits (81), Expect = 4.741e-12
Identity = 18/40 (45.00%), Postives = 24/40 (60.00%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRLIGIG 349
            F+F  +  FGGGKST FGL+  +   A+K+ P  RL   G
Sbjct:   58 FLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAG 97
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.915e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47

HSP 2 Score: 36.5798 bits (83), Expect = 7.915e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.915e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47

HSP 2 Score: 36.5798 bits (83), Expect = 7.915e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.915e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47

HSP 2 Score: 36.5798 bits (83), Expect = 7.915e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91
[Close]
BLAST of EY753713 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.915e-12
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:   75 VSLRTRKFMPSRLLSRKHFVIDVLHPGRAGVSKADLQEIFARL 203
            V++RTRKFM +RLL RK  VIDVLHPG+A V K +++E  A++
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKM 47

HSP 2 Score: 36.5798 bits (83), Expect = 7.915e-12
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 2 
Query:  230 FVFKPRAHFGGGKSTAFGLVSGSGACAQKFVPWCRL 337
            FVF  R HFGGGK+T FG++  S   A+K  P  RL
Sbjct:   56 FVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91
The following BLAST results are available for this feature:
BLAST of EY753713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RS241_ARATH1.164e-1872.3440S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH7.784e-1760.0040S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24B_SCHPO5.480e-1454.5540S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_YEAST2.629e-1356.8240S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24A_SCHPO3.427e-1364.1040S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_DICDI4.741e-1257.4540S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_XENLA7.915e-1258.1440S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_RAT7.915e-1258.1440S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_MOUSE7.915e-1258.1440S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU7.915e-1258.1440S ribosomal protein S24 OS=Mesocricetus auratus ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-A08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753713 ID=EY753713; Name=EY753713; organism=Citrus sinensis; type=EST; length=864bp
TTCCCAGGGCTGACCCACGCGTCCGGGCGAGGTCCTTGTCGACTTTTCNC
CTGGGAGAACCCCCGGGCTTCGCTGTCTCCCTTCGAACTAGGAAGTTCAT
GCCCTCCCGTCTCCTTTCCAGGAAGCACTTCGTTATTGATGTTCTTCATC
CTGGCCGGGCCGGTGTTTCCAAGGCTGATTTGCAGGAGATTTTTGCCCGG
CTGTCTGATGTGTGGGGGCGCCGCTCNTCTTTGTGTTTAAGCCCCGAGCT
CACTTTGGAGGTGGGAAATCTACCGCCTTTGGTCTCGTCTCTGGTTCGGG
TGCCTGTGCTCAGAAGTTTGTGCCCTGGTGCCGGCTTATCGGGATTGGCC
GCGCTTCCGTGGTCCTCTCGGCCGGGCGGCACATGAATGGCTGGCCCCCC
GGGCTCGTATTATCCGCGGTGGTCCTTACACCTGGGGCCCGCTGCCGCCA
AGAGCACGCGAGCTTCGGGTCCTTTGGTGTGTCTCCCGGCCTTGCTCTGT
GTGGCGCCCCTCTGCGCCCTTTCCCGCTGGGGGGGTGCCCCTGCCCCCCC
TGCGCTGTCCCGCGCTGCGGCCCTTGTTGCTTCTTTTCTTCCCCCTCTGT
CTTTCCCTCTCTCTCTTTTGCGCTGGCTGCCTTTGTCGGCGTTGCTCTCG
GGCTTTCTCCTCCTTCTCCCCCGGGCCCCCCTCTCCCCTTTTGGGGTTTT
CCGTGCGCCCCTCCCTCTCCTGCCGGCCCCTCCCCCCCGGCCCGGGCTCC
TTCCTTCCGTTCCCCCGGCGGCCCGGCCGCCCCCCCTCCCCATCGGGNCC
CTCCCTTTCCTCGTCCCGGCCCGTCGGCGTGCCGGGCCCCCCCCAATAAA
AAAAAAAAACGAAA
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