EY753687

Overview
NameEY753687
Unique NameEY753687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753687_ssr72 microsatellite EY753687_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY753687 vs. ExPASy Swiss-Prot
Match: RRAA3_ARATH (Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.390e-13
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 3 
Query:  285 FSGPXVTLKVFEDNVLVRELLEPRGEGKVLVINGGGSMRWALMEG-IWDIGPIYGRSGMV 461
            FSGP VTLKVFEDNVLVR  LE +GEG VLVI+GGGSMR AL+ G +  +    G SG+V
Sbjct:   38 FSGPIVTLKVFEDNVLVRNQLETKGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIV 97

HSP 2 Score: 26.1794 bits (56), Expect = 2.390e-13
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1 
Query:  235 DLRXLHPVXQIYGHGR 282
            DLR LHP+ +IYG  R
Sbjct:   21 DLRALHPIFKIYGQRR 36

HSP 3 Score: 20.4014 bits (41), Expect = 2.390e-13
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2 
Query:  188 ATAEACDS 211
            ATAEACDS
Sbjct:    5 ATAEACDS 12
The following BLAST results are available for this feature:
BLAST of EY753687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RRAA3_ARATH2.390e-1365.00Regulator of ribonuclease-like protein 3 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-005-G04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753687 ID=EY753687; Name=EY753687; organism=Citrus sinensis; type=EST; length=799bp
CACAATGATATCATCATCCTTGATATTTTCTTGATATTAATTAAGGAAAG
AAAAGGAAAGAATTCATTTACCATTCATTCATTCATCCTCAGTCAGCATA
TATAATATAGTTTCAGTACTTCATTTTTCCATAATCTGGGAATTCTCTCT
AAAGCTTGCTCAAGGACGCTATATGGCTGGGGTGGTAGCAACTGCTGAAG
CTTGTGACTCANATGCAGCTCTTCTGGCAGTGGTGACTTGCGCNGTCTGC
ACCCGGTCTTNCAGATCTATGGCCATGGTCGTCATTCTCTGGTCCAGNTG
TCACCCTGAAGGTGTTTGAGGACAATGTTTTGGTTAGAGAGCTGCTTGAA
CCCAGAGGTGAGGGNAAAGTCCTAGTTATAAACGGTGGGGGAAGCATGAG
GTGGGCTCTGATGGAAGGCATTTGGGACATTGGCCCCATATATGGGAGGT
CCGGCATGGTGTGAATGATGCTTAAAAATGTAAAGAAAACATGGAGGGGG
TTGGGCGGGGAACCCTGGGATCTATCTTTGGAACCAACAAAAAGGGCCGG
GGGCAACTGTGCCCGGGGCCTGGCCGCGGAACATGGTGGACCTCATCCCG
AGGGAAAGGGTGTATCCCTAACCAAGGGTTTTTGCTCAAAAGGGCCGGAC
CTTGGTTCACGGTAAGCTTGCACTTTTTTGCGGGGCACAAGAATTTTATG
GTCTAAAGAAAACCTTGGCCCCAACTTTTCCACCGACACGGGGGGCTATG
ATGATGGAAAGATCTTCTTACCGGTTGGCACTGAAACAAAAGTCCTCCG
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