EY727128

Overview
NameEY727128
Unique NameEY727128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY727128 vs. ExPASy Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 90/113 (79.65%), Postives = 104/113 (92.04%), Query Frame = 2 
Query:   14 QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGPAIGLVGTLQAPARDLLMVLKAYAKKLEDESG 352
            +WEALKPCM GMNAWLFVH+EEIPAA+KPYR FQKEKKLEENDF GAVFEGKFY P +FKALE++PTRAEIYA+LLG+L+GPA  +VGT+QAPAR+L+MVLKAY KKLE+E G
Sbjct:  113 KWEALKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225
[Close]
BLAST of EY727128 vs. ExPASy Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.064e-48
Identity = 90/112 (80.36%), Postives = 102/112 (91.07%), Query Frame = 2 
Query:   14 QWEALKPCMSGMNAWLFVHTEEIPAAIKPYRNFQKEKKLEENDFAGAVFEGKFYAPGDFKALESMPTRAEIYAKLLGALQGPAIGLVGTLQAPARDLLMVLKAYAKKLEDES 349
            +WEALKPCM GMNAWLFV T+EIP+AIKPYR+FQKE+KLE NDFAGAVFEGKFYAP +FK LE+MPTRAE+YAK+LGALQ PAI LV TLQAPAR+++MVL AY KKLEDES
Sbjct:  107 KWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDES 218
The following BLAST results are available for this feature:
BLAST of EY727128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK10_TOBAC4.580e-4979.6550S ribosomal protein L10, chloroplastic OS=Nicoti... [more]
RK10_ARATH5.064e-4880.3650S ribosomal protein L10, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-099-C03-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY727128 ID=EY727128; Name=EY727128; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGCCCAATGGGAAGCTCTGAAGCCTTGCATGAGTGGAATGA
ATGCTTGGCTTTTCGTTCACACTGAGGAGATTCCTGCGGCTATTAAGCCG
TACAGGAACTTTCAGAAAGAGAAGAAATTGGAAGAAAATGATTTTGCTGG
GGCGGTTTTTGAAGGCAAGTTTTATGCGCCTGGTGATTTTAAAGCTTTGG
AGAGTATGCCCACGAGAGCTGAGATTTATGCTAAGTTGTTGGGGGCATTG
CAGGGGCCGGCTATTGGATTGGTGGGGACTTTGCAGGCTCCGGCTAGAGA
TTTGCTGATGGTTTTGAAGGCGTATGCGAAGAAGTTGGAGGATGAGAGTG
GGCAATAGTGAATGATTTGAGTGATCGTCTTTCCGTGATGGAGGGTCAAG
TTTTTCCGCATATGCATCAATGAGCTACCTCTTTCCAACTGGTCAATTAC
TAGGAGACTCATGGTCTTTTCATGTTGATTGGAGTATTAGAGTGGCACCG
AAGAGCATAATATAACTATTGTGGTGGGAAGATATTTTTGTGTTAAGTCA
GTATGTCATGTCTCTGCTGCCCGGTATTTGTAGAATTANNACATTTGCAA
GCAGAAAAGAAGGAACTATGTTGATTTGCAGTCTCCCAGAATGTCATTAT
GCATCTGTATATTCAGATTTGTACGTTATGGAACTCCTCATTGGCAATCA
TTACTTTTTCCTTTACACCGTACCCTTTCACAATTTTCTCTCGGTAAGCA
TGCTCCGATTCCTCTGACGTTTCTATTAAATGGACTGGAATGCTTTTGCC
AAAAAAAAAAAAAAAAAAAA
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