EY753644

Overview
NameEY753644
Unique NameEY753644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12302 contig Csv1_Contig12302:23..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753644 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.161e-54
Identity = 90/201 (44.78%), Postives = 138/201 (68.66%), Query Frame = 1 
Query:   16 EMELPLKSIALTIVIVTVLTWAWRVLNWVWLRPEKLEKFLRQQGLKGNSYRLLFGDLKENSIELKEAKARPLSLDDNIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKEIFTRINDFQKVNSI--PLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWP 612
            +M+   K+IA TI  + V+ WAWRVL+W W  P+++EK LRQQG +GN YR L GD+KE+    +EA ++P+  +++I  R+ P ++  +N YG+NSF W G  PR+++M P+ IKE+ T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P
Sbjct:    4 DMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFP 203

HSP 2 Score: 39.2762 bits (90), Expect = 1.161e-54
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 2 
Query:  650 AFGSSYEEGRRIFQLQAELAELQCKSFGQLH-SGMEVFTYKENRRMKEL 793
            AFGS+YEEG +IF+L  EL +L       ++  G      K N+RMKE+
Sbjct:  217 AFGSTYEEGGKIFRLLKELMDLTIDCMRDVYIPGWSYLPTKRNKRMKEI 265
The following BLAST results are available for this feature:
BLAST of EY753644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO1.161e-5444.78Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-005-C03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753644 ID=EY753644; Name=EY753644; organism=Citrus sinensis; type=EST; length=843bp
AAATCTGTCATGTGTGAAATGGAGTTGCCTCTGAAATCCATAGCTTTGAC
CATTGTTATTGTAACGGTGCTAACATGGGCATGGAGAGTGCTGAACTGGG
TGTGGCTGAGGCCCGAGAAGCTGGAGAAATTCCTGAGACAGCAAGGTTTA
AAAGGCAATTCTTACAGGCTTCTGTTTGGTGACTTGAAAGAAAATTCCAT
CGAGCTGAAGGAAGCCAAAGCCAGACCCCTCAGTTTGGATGACAATATTG
CTATTCGTGTCAATCCATTCCTTCATAAACTGGTAAATGATTATGGTAAG
AATTCTTTCATGTGGTTTGGTCCGACACCAAGGGTGAACATTATGAATCC
TGATCAAATAAAAGAGATATTTACCAGGATCAATGATTTTCAAAAAGTCA
ATTCAATCCCACTTGCCAGGCTGCTGATAGTTGGATTGGCTACCCTTGAG
GGGGAGAAGTGGGCTAAACATAGAAAACTCATCAACCCAGCCTTCCACCA
AGAGAAGCTCAAGCTTATGTTGCCAGCATTCTACTTGAGTTGTATCGAAA
TAATTACAAAGTGGGAGAAGCAAATGTCTGTAGAAGGATCATCTGAGTTG
GATGTATGGCCTTATCTTGCAAATTAACAAGTGATGTGATTTCTCGAACG
CTTTTGGGAGTAGTTATGAAGAAGGAAGAAGGATTTTTCAGCTCCAGGCA
GAGCTAGCTGAACTACAATGCAAGTCTTTCGGTCAGTTACATTCCGGAAT
GGAGGTTTTTACCTACAAAGAAAATAGGAGAATGAAAGAATTGACAGGAA
ATCCGGCTTCTTGTTGGGAATATCAAAATAGGAGAAGCATGAA
back to top