EY753601

Overview
NameEY753601
Unique NameEY753601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753601_ssr168 microsatellite EY753601_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753601 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.385e-22
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  218 DQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETP 526
            D  SE R+GN YVPRDE FSEVK   F  KT+ SVLHA VP+ ++A +D    +L FP F  ID LF +GV LP +++ GF ++++PRL++ + D+ GD ILLF+TP
Sbjct:  322 DPKSETRKGNVYVPRDEEFSEVKNAQFLLKTLQSVLHAAVPAAQSALIDNLSLNLPFPSFFVIDKLFEDGVELPGVEKLGFLHSIVPRLLELLRDSPGDKILLFDTP 428          
BLAST of EY753601 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.081e-16
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = -3
Query:  218 DQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP---DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDT-GDNILLFETP 526
            D  SE R+GN YVPRDE FS  K+  F  KTV SVL A VP+ ++  +D    +L FP F  ID LF +GV LP + +  F  +++PRL++ + DT  + IL FETP
Sbjct:  305 DPKSETRKGNVYVPRDEEFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWNLPFPSFFVIDKLFEDGVELPGVDKLNFLESVVPRLLEHLRDTPAEKILRFETP 411          
BLAST of EY753601 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  206 DQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEG----FWNTLLPRLVKAIEDTGDNILLFETPETMD 526
            D  +E R    YVPRDE FS+VK  TFSA T+ S LHA++P++    ++   GF +F AIDAL+++G+ LP     G      N ++PR+V+ IEDT +++L FE PE ++
Sbjct:  281 DPETETRSSPVYVPRDEQFSDVKGRTFSATTLRSGLHAILPAV-APLLNNSHGFSHFPAIDALYSDGIPLPVDGHGGNSFNVINDVIPRVVQMIEDTTEHVLRFEVPEMLE 390          
BLAST of EY753601 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.762e-15
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  218 DQFSEKREGN-FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETP 526
            D  SE+R G  FYVPRDE FS  K  +F+ K V + L ++ P +E+  + P   FP+F AI  LF EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P
Sbjct:  284 DPSSEQRYGGEFYVPRDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKAIQNLFEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAP 384          
BLAST of EY753601 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = -3
Query:  197 DQFSEKREGN---FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP-PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDSKD 526
            D  SE+R       YVPRDE F E KQ TF+A  + +VLH L+PSL+ + +  D  F  F  ID+L+ EG+ L    + + F    LP++V  ++ + + +L ++TP+ + SKD
Sbjct:  310 DMMSERRVEKPLPMYVPRDEQFEESKQNTFAACRLKAVLHNLIPSLKASILAED--FANFGEIDSLYKEGLLLKLGFQDDMFKKFPLPKIVTTLQKSSEGLLRYDTPKIV-SKD 420          
The following BLAST results are available for this feature:
BLAST of EY753601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LOXC2_ORYSJ7.385e-2251.40Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ2.081e-1646.73Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU2.718e-1643.24Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH1.762e-1544.23Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH7.660e-1137.72Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-G03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753601 ID=EY753601; Name=EY753601; organism=Citrus sinensis; type=EST; length=915bp
GGCCGGNATTAAAGGCTCGACCCACGCGTCCGCTTGACCATTTANGTTTG
CCTAGAAAATCCTCACCCCTAAACCAAAAGAATTTGTCTCCTGAAAATAA
CAACTCACACAAATAATAGTTAGTATAAATTCAAGCATCAAATTGAAGAA
ACCTTGATTGTGTTAGAAATTAATTAATTATATAATTTAGAAGAGGGTCC
TTACTGTCCATTGTTTCTGGCGTCTCAAACAGCAAAATATTATCTCCTGT
ATCCTCAATTGCCTTAACCAATCTGGGAAGCAGTGTGTTCCAAAAACCTT
CCTGTTTGAGTGGAGGCAAGTTGACTCCTTCATTGAAGAGTGCGTCAATA
GCAGAGAAGTATGGAAACCCCAGATCAGGATCGACAAAGGCGGTTTCTAA
GGATGGTACCAACGCATGCAACACTGAGTACACCGTCTTTGCTGAAAATG
TTAGCTGCTTTACCTCCGAGAATGCTTCATCCCTTGGAACATAAAAGTTT
CCCTCTCTTTTCTCCGAAAATTGATCTGCATGCATTAACACACACATACG
CACAGGTATGAAATTTGTTTTTTTGAATCCAAATAATGGTGGTTCCTCTC
ATCCTCTGCCCCACTAAAATTAATGTAAATTGCTTCTCCTACTAGAAAGT
GATTAACNNNNNNNNNNNNTNNNACNCNNNANAAGAANAAANNNNNNNNC
ANNNAAAAGAGAAGGGGGAAAAANCAACNAAAAAAAAAAAAAAAAAAAGG
GCGGCCGTTTTAAGGGACCAAGCTTACTTCCGGCGGGGTGCAAGTTATTT
TTTTTTTTGGGGAACCAAAAATAAATACCGGGCGGTTGTTCAAACGTGGG
GGGGGGAAAACCGTGGGTCCCAAATTAATGCGTTGGGAAAATCCCTTTTC
CCGGGGGGAAATACA
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