EY753442

Overview
NameEY753442
Unique NameEY753442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753442_ssr98 microsatellite EY753442_ssr98:98..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753442 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.782e-31
Identity = 77/114 (67.54%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:  538 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYT-PANEDRYLLFIDEXCGXPGYSTGRTCSXRKCXIRSYFHWCS*CIRRATDMAYKA 876
            GIEKK AKLKG+EKAVVARHE GHAVVGTAVA+LLPGQPRVEKLSILPR+GGALGFTYT P  EDRYLLF+DE  G      G   +                IRRATDMAYKA
Sbjct:  592 GIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKA 705
[Close]
BLAST of EY753442 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.452e-31
Identity = 77/114 (67.54%), Postives = 83/114 (72.81%), Query Frame = 1 
Query:  538 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTY-TPANEDRYLLFIDEXCGXPGYSTGRTCSXRKCXIRSYFHWCS*CIRRATDMAYKA 876
            GIEKK+A+LKG+EKAVVARHEAGHAVVGTAVA+LL GQPRVEKLSILPRTGGALGFTY  P +EDRYLLFIDE  G      G   +                IRRATDMAYKA
Sbjct:  571 GIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSGRISTGAFDDIRRATDMAYKA 684
[Close]
BLAST of EY753442 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.877e-30
Identity = 78/114 (68.42%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:  538 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTY-TPANEDRYLLFIDEXCGXPGYSTGRTCSXRKCXIRSYFHWCS*CIRRATDMAYKA 876
            GIEKKTA+LKGSEKAVVARHEAGHAVVGTAVASLL GQ RVEKLSILPR+GGALGFTY  P +EDRYLLFIDE  G      G   +                IRRATDMAYKA
Sbjct:  575 GIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSGRISTGALDDIRRATDMAYKA 688
The following BLAST results are available for this feature:
BLAST of EY753442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FTSH7_ORYSJ3.782e-3167.54Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH7_ARATH6.452e-3167.54Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH9_ARATH1.877e-3068.42Cell division protease ftsH homolog 9, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-G10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753442 ID=EY753442; Name=EY753442; organism=Citrus sinensis; type=EST; length=894bp
AAATGAAGCATTTTTGCTGGCTGGAAGACTAAACAAAGTTGTTGTGGAGA
AAATTGATTTTATTCATGCAGTGGAGCGCTCGATAGCTGTATCATTATCT
CTCTCTCTCTCTCTCTCTCTCCAAGCATCCATATCCCTCAATTTGCTTTA
AGTTCTTCCATGGTTTTTTTAACTTTAACTTTAAGTAAAATTTATTATTT
GGGGATTCTCAAAAAAAAAATTTATTATTTGGGGAGGGATAATAAATTTA
CGGCTAACACAACTATTGATTCCATAGTTAACTTATTTTCCTCTTCTGTC
CAAGTTGATTTTGGATATTTATTCTGCCTCTACTTGCTTTCTTAGTTTTG
TTGAATTCTCCTAATTCTTTATGTCTTACACCTCCTTCCCACCTCCCCAA
GAAAAAAAAAAAGTCCTTTTGTTTTCTGAACTGTGATATCTTGATTTTGA
TTGATCCAACATCGCAGTGAAAATAATCAGAAAATATTAAATAGCTGGTG
AAAAGATGGAAAAACTGAAATATATTACCGTTTATAGGGCATAGAGAAGA
AAACTGCAAAGTTAAAGGGGAGTGAGAAGGCTGTGGTTGCAAGGCATGAA
GCTGGTCACGCAGTAGTAGGCACTGCAGTTGCAAGTCTTCTTCCTGGACA
GCCACGTGTCGAGAAACTAAGCATATTGCCAAGGACAGGAGGGGCACTGG
GATTTACTTATACTCCAGCAAATGAGGATAGATATCTGCTGTTCATTGAT
GAGNTATGTGGTNCGCCTGGTTACTCTACTGGNAGGACGTGCAGCANAAG
AAAGTGCNTTATTCGGTCGTATTTCCACTGGTGCTCTTGATGCATACGGC
GAGCAACCGACATGGCGTACAAGGCATAGCTGAATATGGTCTAA
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