GE213175

Overview
NameGE213175
Unique NameGE213175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10582 contig Csv1_Contig10582:697..1428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.176e-89
Identity = 159/188 (84.57%), Postives = 171/188 (90.96%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASD---SHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 578
            +FKEQLQQHVRVHAVEAVM CREIEN L +LTG +LGEG+GATMS+DEDDL MDFS D S  D    HD+ GFGPLLPTE+ERSLMERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDTT+VLK WWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKSKRK
Sbjct:  106 SFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLQMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKSKRK 293          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.712e-89
Identity = 159/188 (84.57%), Postives = 171/188 (90.96%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASD---SHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 578
            +FKEQLQQHVRVHAVEAVM CREIEN L +LTG +LGEG+GATMS+DEDDL MDFS D S  D    HD+ GFGPLLPTE+ERSLMERVRQELK+ELKQGFKSRIEDVREEI+RKRRAGKLPGDTT+VLK WWQQH KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NS S+TSLKSKRK
Sbjct:  103 SFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFKSRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLTSLKSKRK 290          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.046e-83
Identity = 154/188 (81.91%), Postives = 170/188 (90.43%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLH--MDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 581
            +F+EQLQQHVRVHAVEAVM CREIE +LQ LTG +L EGTGATMS+DED+    ++  +D   SD HDLMGFGPL+PT++ERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTT++LK WWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWH+NSQ+ T LKSKRKR
Sbjct:  129 SFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGATMSEDEDETAPMLEGPMDMG-SDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQTST-LKSKRKR 314          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.082e-80
Identity = 146/187 (78.07%), Postives = 162/187 (86.63%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDD-LHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 581
            +FKEQLQQHVRVHA+EAVM C EIE +LQ+LTGVS GEGT ATMSDDEDD +  D +L     + HD MGFGPL+PTE+ERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + T LKSKRKR
Sbjct:  241 SFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTSATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 427          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.261e-77
Identity = 143/191 (74.87%), Postives = 161/191 (84.29%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSH------DLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 578
            +FKEQLQQHVRVHA+EAVM C EIE +LQ+LTGVS GEG GATMSDDED+        Q  SD++      D++GFGPL+PTE+ERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T LK+KRK
Sbjct:  236 SFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDE--------QVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKNKRK 418          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: LET12_SOLLC (Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.603e-76
Identity = 139/189 (73.54%), Postives = 159/189 (84.13%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDD-LHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR*R 587
            +FKEQLQQHVRVHA+EAVM C E+E +LQ+LTGV+ GEGTGATMSDD+DD    D +      D  D MGFGPL+PTE+ERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  + +S KS+ +  R
Sbjct:  238 SFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVAPGEGTGATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSSSQKSQTQECR 426          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 8.028e-76
Identity = 141/191 (73.82%), Postives = 160/191 (83.77%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSH------DLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 578
            +FKEQLQQHVRVHA+EAVM C EIE +LQ+ TGVS GEGTGATMS+DED+        Q  SD+H      D +GFGPL+PTE+ERSLMERVRQELK ELKQG+K +I D+REEILRKRRAGKLPGDTTSVLK+WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S T  K+KR+
Sbjct:  200 SFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDE--------QVESDAHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVSKNKRR 382          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNOSD_ORYSJ (Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 5.753e-74
Identity = 137/186 (73.66%), Postives = 156/186 (83.87%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDD-LHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRK 578
            +FKEQLQQHVRVHA+EAVM C E+E  LQ+LTG S GEGTGATMSD EDD    + ++   + D  D MGFG  LPTE+ERSLMERVRQELK ELKQG+K ++ D+REEILRKRRAGKLPGDTTS LK WWQ H+KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S TS+K+KRK
Sbjct:  183 SFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATMSDGEDDQADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQGYKEKLIDIREEILRKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTSVKTKRK 366          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNOSB_ORYSJ (Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.186e-73
Identity = 136/186 (73.12%), Postives = 154/186 (82.80%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 581
            +FKEQLQQHVRVHA+EAVM C E+E TLQ+LTG S  EG+GATMSDDED+     S     +D  D MGFGPL+ TE ERSL+ERVRQELK ELKQG++ ++ D+REEILRKRRAGKLPGDT S LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S +S KSKRKR
Sbjct:  126 SFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGATMSDDEDNQVDSESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREKLVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPASSSSDKSKRKR 311          
BLAST of GE213175 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 4.870e-73
Identity = 135/186 (72.58%), Postives = 155/186 (83.33%), Query Frame = 3
Query:   24 TFKEQLQQHVRVHAVEAVMGCREIENTLQALTGVSLGEGTGATMSDDEDDLHMDFSLDQSASDSHDLMGFGPLLPTETERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 581
            +FKEQLQQHVRVHA+EAVMGC E+E +LQ+LTG S GEGTGATMSDDED+     +     +D  D MGFGPL+ TE ERSL+ERVR ELK ELKQG+K ++ D+REEILRKRRAGKLPGDT S+LK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQINNWFINQRKRNWHSN  S +  K+K+KR
Sbjct:  117 SFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSDDEDNQVDSEANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKLVDIREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSNPAS-SGEKTKKKR 301          
The following BLAST results are available for this feature:
BLAST of GE213175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HD1_BRANA2.176e-8984.57Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
KNAT7_ARATH3.712e-8984.57Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
KNOS3_ORYSJ1.046e-8381.91Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]
KNAP3_MALDO1.082e-8078.07Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]
KNAT3_ARATH7.261e-7774.87Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
LET12_SOLLC3.603e-7673.54Homeobox protein knotted-1-like LET12 OS=Solanum l... [more]
KNAT4_ARATH8.028e-7673.82Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNOSD_ORYSJ5.753e-7473.66Homeobox protein knotted-1-like 13 OS=Oryza sativa... [more]
KNOSB_ORYSJ2.186e-7373.12Homeobox protein knotted-1-like 11 OS=Oryza sativa... [more]
KNOS2_ORYSJ4.870e-7372.58Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank description13 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213175 ID=GE213175; Name=GE213175; organism=Citrus sinensis; type=EST; length=732bp
ATTAGCGTGGTCGCGGCCGAGGTACTTTCAAAGAGCAGCTTCAGCAGCAC
GTCAGAGTCCATGCCGTTGAAGCTGTCATGGGCTGCCGTGAAATTGAGAA
TACTTTGCAAGCTCTCACCGGAGTATCATTGGGTGAAGGGACAGGCGCAA
CAATGTCTGACGATGAGGATGACCTACATATGGATTTCTCTCTTGATCAA
TCTGCTTCTGATAGTCATGATTTGATGGGTTTTGGTCCATTACTTCCTAC
TGAAACTGAAAGGTCTCTTATGGAAAGAGTTAGACAGGAGTTGAAGATTG
AACTGAAGCAGGGTTTTAAATCAAGAATTGAAGATGTAAGAGAGGAAATA
TTGAGAAAAAGAAGGGCCGGAAAATTGCCCGGTGACACAACTTCAGTGCT
CAAGACTTGGTGGCAGCAACACTCCAAATGGCCATACCCAACTGAAGATG
ACAAGGCAAAGCTAGTGGAGGAGACAGGCTTGCAACTAAAGCAAATCAAC
AACTGGTTCATCAACCAGAGGAAGCGCAACTGGCACAGCAACTCCCAGTC
TGTGACGTCTTTAAAGTCAAAGCGCAAAAGGTAGAGAGATATCACCAAAT
ATATCTTGACGATGAATTAATGATGTATGAGCAATGAAGGAGTAACTCAC
TTTTGTGTCAACACACATATAGCTCTATCTAGCTAGCTTGCTTTTGTGGC
TCTGGGGTACCTGCCCGGGCGGCCGCTCGAAA
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