EY726584

Overview
NameEY726584
Unique NameEY726584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY726584 vs. ExPASy Swiss-Prot
Match: THOC1_MOUSE (THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.017e-27
Identity = 68/175 (38.86%), Postives = 89/175 (50.86%), Query Frame = 2 
Query:   65 IPVDFNFYKTFWSLQEYFCNPALTLAPTKWQKFTSSLMVVLNTFDAQPLSDEVGDANVLEEEAA----TFNIKYLTSSKLMGLELKDPSFRRHVLVQCLILFDYLK--APGKNDKDLPXXXXXXXXXXXXXRVKKLLETTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ 571
            IP+D+N Y+ FWSLQ+YF NP        W+ F      VL  F +  L D       +EE        +  K+LTS KLM L+L D +FRRH+L+Q LILF YLK     K+   +               V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+
Sbjct:  228 IPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKE 402
[Close]
BLAST of EY726584 vs. ExPASy Swiss-Prot
Match: THOC1_HUMAN (THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.017e-27
Identity = 68/175 (38.86%), Postives = 89/175 (50.86%), Query Frame = 2 
Query:   65 IPVDFNFYKTFWSLQEYFCNPALTLAPTKWQKFTSSLMVVLNTFDAQPLSDEVGDANVLEEEAA----TFNIKYLTSSKLMGLELKDPSFRRHVLVQCLILFDYLK--APGKNDKDLPXXXXXXXXXXXXXRVKKLLETTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ 571
            IP+D+N Y+ FWSLQ+YF NP        W+ F      VL  F +  L D       +EE        +  K+LTS KLM L+L D +FRRH+L+Q LILF YLK     K+   +               V +LL   PP G+ F   +EHIL  E+NW  WK +GCP F K+
Sbjct:  228 IPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKE 402
The following BLAST results are available for this feature:
BLAST of EY726584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
THOC1_MOUSE2.017e-2738.86THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=... [more]
THOC1_HUMAN2.017e-2738.86THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-092-E11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY726584 ID=EY726584; Name=EY726584; organism=Citrus sinensis; type=EST; length=917bp
TGAACTAAAGGGAGTCTTCTTTACGTCAAATGAGACCAAATATGAAAAAG
ACCCACCTGATGGCATTCCTGTTGATTTCAACTTCTATAAAACTTTTTGG
AGTTTACAGGAATACTTTTGTAACCCTGCTCTGACCCTTGCTCCAACAAA
ATGGCAGAAATTCACATCCAGTTTAATGGTTGTGTTGAACACTTTCGATG
CTCAGCCTTTGAGTGATGAAGTGGGAGATGCAAATGTTTTGGAGGAAGAG
GCAGCAACTTTCAATATAAAGTATCTTACCAGCAGTAAATTAATGGGTTT
AGAGTTGAAAGATCCGAGCTTTAGACGACATGTTCTTGTGCAGTGCCTCA
TATTGTTTGATTATCTAAAGGCCCCTGGAAAAAATGACAAAGATTTGCCA
TCTGAAAGCATGAAAGAAGAAATGAAGTCTTGTGAAGAGCGAGTAAAGAA
ACTGCTTGAAACGACCCCGCCTAAAGGGAAGGATTTTCTTCATAGTATTG
AGCATATATTGGAACGTGAAAAGAATTGGGTGTGGTGGAAACGTGATGGC
TGTCCACCTTTTGAAAAGCAATCTATGGAGAAGAAAGCAGTTCAAGATGG
ACCTAAAAAACGTAAGCCAAGGTGGAGACTTGAAAATAAAAACTCTCTCA
GTTGGGGAAATGGGCAGAATCAAATCCGAATGCTTTGACCGATCCTCAAC
GTGTTAACAATCCCTGCCATCACTGAATATTGGAAACCTTTGGGTGAACA
AAATGGACCCTCCTGCAGGAAAAAAAACTTAATTAACCCCACAAAAAAAA
CCCAAATTTTTTTGTTGGAAAAGGCCTCCCAATTTTCACCCTCCCCCAGA
ACTTGGGAATGGGGTTTTTTAAAATTTTTCTTGACCTCGGGGTTTTTAAA
AAGAGTTTTGCGCCACC
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