EY753392
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD_ANASP (RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 7.280e-29 Identity = 69/221 (31.22%), Postives = 128/221 (57.92%), Query Frame = 1 Query: 79 QEGLKQPTIFSAERALNSRGR-RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMG 738 Q K T S L GR RL+ A E E+++ + + LER++ L ++ + R + WA+A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++ ++ S++ +G Sbjct: 71 QSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 291
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD1_SYNE7 (RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 1.162e-26 Identity = 62/199 (31.16%), Postives = 118/199 (59.30%), Query Frame = 1 Query: 142 RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMG 738 RL+ A E E+++ + + LERI+ L ++ + WA A ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + EIA +++ ++R ++ ++ S++ +G Sbjct: 102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 300
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD3_SYNE7 (RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26 Identity = 66/207 (31.88%), Postives = 117/207 (56.52%), Query Frame = 1 Query: 145 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNC-WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGDCLMAKIG 762 L+ E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + ++I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +A AR I++P + +++KI+K ++ L+ G+ E+A L+ A++R E R S+D ++GD ++G Sbjct: 24 LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQVRDYLEKARHPLSLDLRVGDNQDTELG 230
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD_MICAE (RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.399e-24 Identity = 62/205 (30.24%), Postives = 113/205 (55.12%), Query Frame = 1 Query: 124 LNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMG 738 L R ++++ ++E E L IK L K A L W + K+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA +++ ++R ++ ++ S++ +G Sbjct: 121 LFERIEKIIVEKSEKE--------PKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIG 317
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD2_SYNE7 (RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24 Identity = 60/200 (30.00%), Postives = 112/200 (56.00%), Query Frame = 1 Query: 142 RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGD 741 RL+ A E + VQ + L +T L G WA A ++ L + + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYKFSTY +WIR++I++ +A+ +R I++P + +++K++K ++ L+ G+ E+A+ L L ++R + R S+D K+GD Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGD 223
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD_MYCTU (RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.499e-23 Identity = 67/236 (28.39%), Postives = 122/236 (51.69%), Query Frame = 1 Query: 67 SEALQEGLKQPTIFSAERALNSRGRR-----LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGD 741 SEAL++ K + ++ ++ + ++ L+ A E E++K ++ ++ T L + K Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++ ++ + R S+DQ +GD Sbjct: 209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAA---------------QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD_MYCBO (RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.499e-23 Identity = 67/236 (28.39%), Postives = 122/236 (51.69%), Query Frame = 1 Query: 67 SEALQEGLKQPTIFSAERALNSRGRR-----LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGD 741 SEAL++ K + ++ ++ + ++ L+ A E E++K ++ ++ T L + K Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E+AK ++ ++ + R S+DQ +GD Sbjct: 209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAA---------------QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGD 429
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD_THEMA (RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 4.570e-23 Identity = 52/138 (37.68%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 328 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMGD 741 +E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + R+ HG+ P E+AK G +I+ E + S++ +G+ Sbjct: 156 KEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGE 293
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPOD_SYNY3 (RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23 Identity = 50/161 (31.06%), Postives = 99/161 (61.49%), Query Frame = 1 Query: 256 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMG 738 N W+Q + ++ L ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + EIA+ +++ ++R ++ ++ S++ +G Sbjct: 166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIG 326
BLAST of EY753392 vs. ExPASy Swiss-Prot
Match: RPSB_ANASP (RNA polymerase sigma-B factor OS=Anabaena sp. (strain PCC 7120) GN=sigB PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.737e-22 Identity = 60/198 (30.30%), Postives = 111/198 (56.06%), Query Frame = 1 Query: 145 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKMG 738 L+ E ++ VQ + + K L ++ + L WA + E VL Q L+ G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY +WIR+ I++ +A+ +R I++P + +++KI+ ++ L+ G EIA+ L ++IR + +R S+D ++G Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQIREYLQLVRQPVSLDMRIG 234 The following BLAST results are available for this feature:
BLAST of EY753392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753392 ID=EY753392; Name=EY753392; organism=Citrus sinensis; type=EST; length=854bpback to top |