GE213174

Overview
NameGE213174
Unique NameGE213174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2079 contig Csv1_Contig2079:508..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 5.025e-47
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYK+E DL AALKRCFP+GID+YFENVGGKMLDAVLLNM   GRIAVCGMISQY
Sbjct:  157 VYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQY 258          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.119e-46
Identity = 90/102 (88.24%), Postives = 94/102 (92.16%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYK+E DL AALKRCFP GIDIYFENVGGKMLDAVL+NM + GRIAVCGMISQY
Sbjct:  159 VYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQY 260          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.386e-27
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  +AV+L M+  GRIA+CG ISQY
Sbjct:  145 VMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQY 245          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.195e-26
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  + V+L M+  GRIA+CG ISQY
Sbjct:  145 VLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQY 245          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.744e-26
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK  +  +  G+D  FNYK+E    A  + C P+GIDIYFENVGG+ +DAVL NM L+GRI  CG ISQY
Sbjct:  164 IYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPFKALPRLC-PKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQY 263          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.386e-26
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK K GFD AFNYK    L+  LK+  P G D YF+NVGG+  + V+  M+  GR+A+CG IS Y
Sbjct:  145 VLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGGEFSNTVIRQMKKFGRVAICGAISMY 245          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.089e-25
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AFNYK    L+  LK+  P+G D YF+NVGG+  +AV   M+  GRIA+CG IS Y
Sbjct:  145 VMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGGEFSNAVTSQMKKFGRIAICGAISTY 245          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.423e-25
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQY 331
            V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+CG IS Y
Sbjct:  145 VLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVY 245          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.406e-25
Identity = 61/108 (56.48%), Postives = 72/108 (66.67%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYLPGRPL 349
            V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD A NYK    L+ ALK   P+G D YF+NVGG+  +  +  M+  GRIA+CG IS Y    PL
Sbjct:  145 VLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYNRTSPL 251          
BLAST of GE213174 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.020e-23
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 2
Query:   26 VYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYLPGRPL 349
            V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+  P G D YF+NVGG+  + V+  M+  GRIA+CG IS Y    PL
Sbjct:  145 VMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPL 251          
The following BLAST results are available for this feature:
BLAST of GE213174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
P2_ARATH5.025e-4789.22Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.119e-4688.24Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
PTGR1_MOUSE3.386e-2761.76Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_RAT2.195e-2659.80Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
YKM8_SCHPO3.744e-2658.82Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_RABIT6.386e-2656.86Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_PIG1.089e-2558.82Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_CAVPO1.423e-2558.82Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_BOVIN5.406e-2556.48Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_HUMAN1.020e-2353.70Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]

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Properties
Property NameValue
Genbank description12 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213174 ID=GE213174; Name=GE213174; organism=Citrus sinensis; type=EST; length=353bp
ATTAGCGTGGTCGCGGCCGAGGTACGTCTATGTATCTGCAGCATCTGGAG
CTGTTGGTCAGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTATGTT
GTTGGAAGTGCTGGAAGCAAAGAAAAGGTCGATTTGTTGAAGAACAAGTT
TGGATTTGATGATGCTTTTAACTACAAGCAAGAGCCAGACTTGGATGCAG
CACTCAAAAGATGCTTCCCTCAAGGAATCGACATATATTTCGAAAACGTT
GGGGGAAAGATGCTGGACGCAGTGCTACTCAACATGAGGCTCCGGGGCCG
CATTGCGGTATGCGGTATGATCTCGCAGTACCTGCCCGGGCGGCCGCTCG
AAA
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